Bioinformaticx
@Bioinformaticx
Bioinformatics methods & tools #genomics #proteomics #metagenomics #assembly #virology #plant #biology #sequencing #DNA #eDNA #aDNA #genes #ML #AI #science #DB
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Learning a generalized graph transformer for protein function prediction in dissimilar sequences doi.org/10.1093/gigasc… #Bioinformatics #Bioinformaticx
Intra-host genomic diversity and integration landscape of human tissue-resident DNA virome doi.org/10.1093/nar/gk… #Bioinformatics #Bioinformaticx
Fully resolved assembly of Cryptosporidium parvum doi.org/10.1093/gigasc… #bioinformatics #bioinformaticx
A super-pangenome of the North American wild grape species doi.org/10.1186/s13059… #Bioinformatics #Bioinformaticx
AlcoR: alignment-free simulation, mapping, and visualization of low-complexity regions in biological data doi.org/10.1093/gigasc… #Bioinformatics #Bioinformaticx
Efficient and accurate KIR and HLA genotyping with massively parallel sequencing data doi.org/10.1101/gr.277… #Bioinformatics #Bioinformaticx
Efficient mapping of accurate long reads in minimizer space with mapquik doi.org/10.1101/gr.277… #Bioinformatics #Bioinformaticx
Efficient short read mapping to a pangenome that is represented by a graph of ED strings doi.org/10.1093/bioinf… #Bioinformatics #Bioinformaticx
Scrooge: A Fast and Memory-Frugal Genomic Sequence Aligner for CPUs, GPUs, and ASICs doi.org/10.1093/bioinf… #Bioinformatics #Bioinformaticx
mlf-core: a framework for deterministic machine learning doi.org/10.1093/bioinf… #Bioinformatics #Bioinformaticx
DNAscan2: a versatile, scalable, and user-friendly analysis pipeline for human next-generation sequencing data doi.org/10.1093/bioinf… #Bioinformatics #Bioinformaticx
DeepOM: Single-molecule optical genome mapping via deep learning doi.org/10.1093/bioinf… #Bioinformatics #Bioinformaticx
Unmasking the tissue-resident eukaryotic DNA virome in humans doi.org/10.1093/nar/gk… #Bioinformatics #Bioinformaticx
Foldcomp: a library and format for compressing and indexing large protein structure sets doi.org/10.1093/bioinf… #Bioinformatics #Bioinformaticx
Unmasking the tissue-resident eukaryotic DNA virome in humans doi.org/10.1093/nar/gk… #Bioinformatics #Bioinformaticx
AGC: Compact representation of assembled genomes with fast queries and updates doi.org/10.1093/bioinf… #Bioinformatics #Bioinformaticx
Great opportunity for learning, networking, and visiting Lisbon olissipo.inesc-id.pt/modelling-anal… #Bioinformatics #computationalbiology #SingleCell @Olissipo_eu
Chromosome-level genome assembly for the Aldabra giant tortoise enables insights into the genetic health of a threatened population doi.org/10.1093/gigasc… #Bioinformatics #Bioinformaticx
Needle: a fast and space-efficient prefilter for estimating the quantification of very large collections of expression experiments doi.org/10.1093/bioinf… #Bioinformatics #Bioinformaticx
Insertions and deletions as phylogenetic signal in an alignment-free context doi.org/10.1371/journa… #Bioinformatics #Bioinformaticx
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