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CompSystBiol

@CompSystBiol

Last paper from the lab, revealing how the "same" neurons transcriptionally and functionally differ depending on their position. "Translational profiling of mouse dopaminoceptive neurons reveals a role of PGE2 in dorsal striatum" biorxiv.org/content/10.110…


In this new paper using imaging and modelling, we proposed a multi-step mechanism for mitophagy tandfonline.com/doi/full/10.10… #autophagy #systbiol


Our new paper modelling the complex regulation of calcium signalling in synaptic plasticity is out journals.plos.org/ploscompbiol/a…


Our paper with the @SanjaySinhaUK lab made the cover of @Dev_journal dev.biologists.org/content/146/24… With a nice highlight too dev.biologists.org/content/146/24… Both bench and keyboard biology recognised :-)


Our first scRNAseq paper. Decrypting the regulation of epicardial heterogeneity. dev.biologists.org/content/early/#stemcells #regenerativemedicine #cardiovascular


New paper: Epicardial cells derived from human embryonic stem cells augment cardiomyocyte-driven heart regeneration. nature.com/articles/s4158… #stemcells #regenerativemedicine #Cardiology


New annual batch of standards specifications published in JIB, incl. SBML doi.org/10.1515/jib-20… and SBOLv doi.org/10.1515/jib-20…


New paper showing how to use metabolomics to improve objective function for constraint-based modeling. Multi-Omics and Genome-Scale Modeling Reveal a Metabolic Shift During C. elegans Aging frontiersin.org/articles/10.33…


A consensus whole genome metabolic reconstruction is now available for Caenorhabditis elegans, developed by the #WormJam effort frontiersin.org/articles/10.33… #recon #systbiol #FBA


CompSystBiol reposted

"Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite" Now in BioRxiv biorxiv.org/content/early/… Super useful tool to improve your GSMM #systbiol #fba #sbml


CompSystBiol reposted

Our JIB Special Issue on #SystemsBiology is finally online, check it out 👉 bit.ly/sysbio18 #bioinformatics #sysbio #openaccess

JIB_DeGruyter's tweet image. Our JIB Special Issue on #SystemsBiology is finally online, check it out 👉 bit.ly/sysbio18
#bioinformatics #sysbio #openaccess

Bioinformatician post-doc position to work on single cell omics for regenerative cardiovascular medicine. Collaboration between @BabrahamInst and Sinha Lab at the @SCICambridge jobs.cam.ac.uk/job/17116/


CompSystBiol reposted

The first two articles of our upcoming Special Issue on "Standards in Systems Biology" are online! 👏 @sbmlnews @mhucka bit.ly/JIB-AoP #systemsbiology #sysbio #compbiol #modeling #sbml #openaccess

JIB_DeGruyter's tweet image. The first two articles of our upcoming Special Issue on "Standards in Systems Biology" are online! 👏 @sbmlnews @mhucka 
bit.ly/JIB-AoP
#systemsbiology #sysbio #compbiol #modeling #sbml #openaccess

CompSystBiol reposted

New standard online 👉"Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)": bit.ly/SED_ML @dagmarwaltemath @bergmannf @konigmatt @imbalrog @andreshouse @lenovere @Brett_Olivier #openaccess

JIB_DeGruyter's tweet image. New standard online 👉"Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)":  bit.ly/SED_ML  @dagmarwaltemath @bergmannf @konigmatt @imbalrog @andreshouse @lenovere @Brett_Olivier #openaccess

CompSystBiol reposted

The new week starts with another article of our upcoming Issue on Standards in Systems Biology! 👉 bit.ly/JIB-SBOL @SBOLstandard #SBOL #synbio #openaccess

JIB_DeGruyter's tweet image. The new week starts with another article of our upcoming Issue on Standards in Systems Biology! 
👉 bit.ly/JIB-SBOL
@SBOLstandard #SBOL #synbio #openaccess

Piero Dalle Pezze's repetitive analysis tool SBPIPE can now be used through R, via the sbpiper package cran.r-project.org/web/packages/s… #simulation #estimation #systbiol


New post-doc position in the lab, to work on pathways mediating intra-neuronal transport of toxic aggregates in various neurodegenerative diseases. Apply at babraham.ac.uk/vacancies-trai…


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