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Last paper from the lab, revealing how the "same" neurons transcriptionally and functionally differ depending on their position. "Translational profiling of mouse dopaminoceptive neurons reveals a role of PGE2 in dorsal striatum" biorxiv.org/content/10.110…
In this new paper using imaging and modelling, we proposed a multi-step mechanism for mitophagy tandfonline.com/doi/full/10.10… #autophagy #systbiol
Our new paper modelling the complex regulation of calcium signalling in synaptic plasticity is out journals.plos.org/ploscompbiol/a…
Our paper with the @SanjaySinhaUK lab made the cover of @Dev_journal dev.biologists.org/content/146/24… With a nice highlight too dev.biologists.org/content/146/24… Both bench and keyboard biology recognised :-)
Our first scRNAseq paper. Decrypting the regulation of epicardial heterogeneity. dev.biologists.org/content/early/… #stemcells #regenerativemedicine #cardiovascular
2nd version of our paper on #modelling #autophagy and #mitophagy is online biorxiv.org/content/10.110…
New paper: Epicardial cells derived from human embryonic stem cells augment cardiomyocyte-driven heart regeneration. nature.com/articles/s4158… #stemcells #regenerativemedicine #Cardiology
New paper on SBOL visual: Communicating Structure and Function in Synthetic Biology Diagrams pubs.acs.org/doi/10.1021/ac… #syntheticBiology #standards
pubs.acs.org
Communicating Structure and Function in Synthetic Biology Diagrams
Biological engineers often find it useful to communicate using diagrams. These diagrams can include information both about the structure of the nucleic acid sequences they are engineering and about...
New annual batch of standards specifications published in JIB, incl. SBML doi.org/10.1515/jib-20… and SBOLv doi.org/10.1515/jib-20…
New paper showing how to use metabolomics to improve objective function for constraint-based modeling. Multi-Omics and Genome-Scale Modeling Reveal a Metabolic Shift During C. elegans Aging frontiersin.org/articles/10.33…
A consensus whole genome metabolic reconstruction is now available for Caenorhabditis elegans, developed by the #WormJam effort frontiersin.org/articles/10.33… #recon #systbiol #FBA
"Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite" Now in BioRxiv biorxiv.org/content/early/… Super useful tool to improve your GSMM #systbiol #fba #sbml
Graphical representations of molecular mechanisms underpinning diseases can integrate large amounts of disparate knowledge and provide new systems-wide insights nature.com/articles/s4154…
nature.com
Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms
npj Systems Biology and Applications - Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms
Our JIB Special Issue on #SystemsBiology is finally online, check it out 👉 bit.ly/sysbio18 #bioinformatics #sysbio #openaccess
Bioinformatician post-doc position to work on single cell omics for regenerative cardiovascular medicine. Collaboration between @BabrahamInst and Sinha Lab at the @SCICambridge jobs.cam.ac.uk/job/17116/
The first two articles of our upcoming Special Issue on "Standards in Systems Biology" are online! 👏 @sbmlnews @mhucka bit.ly/JIB-AoP #systemsbiology #sysbio #compbiol #modeling #sbml #openaccess
New standard online 👉"Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)": bit.ly/SED_ML @dagmarwaltemath @bergmannf @konigmatt @imbalrog @andreshouse @lenovere @Brett_Olivier #openaccess
The new week starts with another article of our upcoming Issue on Standards in Systems Biology! 👉 bit.ly/JIB-SBOL @SBOLstandard #SBOL #synbio #openaccess
Piero Dalle Pezze's repetitive analysis tool SBPIPE can now be used through R, via the sbpiper package cran.r-project.org/web/packages/s… #simulation #estimation #systbiol
New post-doc position in the lab, to work on pathways mediating intra-neuronal transport of toxic aggregates in various neurodegenerative diseases. Apply at babraham.ac.uk/vacancies-trai…
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