Open-Source Microscopy
@OSMicroscopy
Retweets #OpenSource #Microscopy (hardware, software, probs/labels). Keeps lists and moments for each topic.
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SCIENCE NEWS: Calling all Microscopists! Do you images of ANY aspect of the natural world? Deadline is approaching for Nikon Small World competition 2020: enter.nikonsmallworld.com @micro_worlds @OSMicroscopy @MicroscopySoc @MicroscopeEvent Last year's wonderful winner:
If you're keen to get started, you can build a regular @OpenFlexure microscope in anticipation :) we've not pulled in the new work from Strathclyde, but full parts and build instructions for the mechanical stage (which I don't think has changed) are at openflexure.org
An SRRF microscope for $1200! Sounds cool strathprints.strath.ac.uk/70497/ @HenriquesLab @OSMicroscopy
The Github for the "Open source laser engine" project from @JonasRies lab has developped recently with lots of details added (cc @OSMicroscopy) github.com/ries-lab/Laser…
A fully open-source #OPT (off-the-shelf and inexpensive parts) for large sample imaging. #GPU accelerated reconstructions in @FijiSc. Cool work from the Kaminski lab including @LaineBioImaging who recently joined our lab =). @gaby_gmartins @sebastianmunck you'll enjoy this one
OptiJ: Open-source optical projection tomography of large organ samples biorxiv.org/cgi/content/sh… #biorxiv_biophys
Open-source microscope incubator by @seamus_holden =)
OptiJ: Open-source optical projection tomography of large organ samples biorxiv.org/cgi/content/sh… #biorxiv_biophys
DIY NIR laser-based system for autofocus with piezo controller including comprehensive how-to-build instructions (big.umassmed.edu/wiki/index.php…)
A quick question for #microscopy twitter: I know there are loads of people sharing DIY & open source microscope builds. Is there a database or curated list of them all somewhere? tia :)
Really cool @Raspberry_Pi / @pimoroni based microscope. @OSMicroscopy @LabOnTheCheap nature.com/articles/s4159…
New NicoLase config. Mix and match 6 lasers between makers w/ easy alignment, then put launch and the rest of your 'scope gear into a rack that fits nicely under an optical table. github.com/PRNicovich/Nic…
Great open source system for nanoinjection! @OSMicroscopy. I would love to try!
Matthias' and Simon's #MyOAarticle @nanoscopics "MoNa – A Cost-Efficient, Portable System for the Nanoinjection of Living Cells" is now out in Sci. Rep. yay!! nature.com/articles/s4159…
Open hardware fans : NicoLase now includes Micro-manager device support. Set up laser config channels and toggle output w/ GUI. Use in multi-D acquisition or any plug-in. Works just like filter wheel + shutter. Check out repo for latest updates. github.com/PRNicovich/Nic…
We can recruit! Opportunities in my team at Uni. Cambridge, to develop #lightsheet #microscopy, biochemical imaging and #optogenetics : jobs.cam.ac.uk/job/20929/ Please RT @openspim @OSMicroscopy
Instructions to build Angstrom, a tuneable LED light source for under £100 with 12 PWM controlled LED channels spanning 390nm-780nm combined with fibre-coupled outputs - for microscopy source (instructables.com/id/Angstrom-a-…)
Have you ever had to guess parameters for a denoising algorithm? We have come up with the theoretical framework of 'J-invariance' to explain how to optimally tune any denoising algorithm in the absence of ground truth. Great work with @thebasepoint @czbiohub
I'm happy to share Noise2Self, a framework for blind-denoising high dimensional measurements. We calibrate classical image denoisers and train deep neural nets; the same idea works on matrices of single-cell gene expression. Find out how: arxiv.org/abs/1901.11365 w/ @loicaroyer
ThunderSTORM with phasor-SMLM is now listed under the update sites of #ImageJ and @FijiSc, along with future plugins of @HohlbeinLab!
Hi all! @J_Cell_Sci @Co_Biologists @christlet and I are exploring community enthusiasm to set up an online resource on #OpenSource #Microscopy. Inspired by @the_Node @preLights but dedicated to linking biology research and the microscopy development community. Can you help? 1/5
Massive quantitative comparison of the performance of 3D SMLM super-resolution algorithms. Majority #OpenSource. Awesome manuscript
I'm happy to share Noise2Self, a framework for blind-denoising high dimensional measurements. We calibrate classical image denoisers and train deep neural nets; the same idea works on matrices of single-cell gene expression. Find out how: arxiv.org/abs/1901.11365 w/ @loicaroyer
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