saurav317's profile picture. PhD student at @universityofga | MTech (@IIITDelhi)

Saurav Choudhary

@saurav317

PhD student at @universityofga | MTech (@IIITDelhi)

Saurav Choudhary reposted

A spectacular win by the Indian team in the ICC Women’s Cricket World Cup 2025 Finals. Their performance in the final was marked by great skill and confidence. The team showed exceptional teamwork and tenacity throughout the tournament. Congratulations to our players. This…


Saurav Choudhary reposted

So many people keep asking me about Continue. What is it? What are you up to? Here you go... Continue started as a research effort two years ago, with the belief that if the human body is a system, it should also have its leverage points. The simple levers that, when adjusted,…


Saurav Choudhary reposted

Happy Diwali 🪔!


Saurav Choudhary reposted

Have to stay at home this year for a newborn baby. But the Ye lab is well-represented #ASHG25. Check out the posters from our 7 grad students!

yekaixiong's tweet image. Have to stay at home this year for a newborn baby. But the Ye lab is well-represented #ASHG25. Check out the posters from our 7 grad students!

Saurav Choudhary reposted

Congrats to @xx_huifang and @YitangS for their tremendous efforts on this project to characterize the shared genetic basis between circulating fatty acids and brain disorders!

Latest publication in @jlipidres “Widespread but moderate genetic overlap between circulating polyunsaturated fatty acids and brain disorders” by @xx_huifang et al. jlr.org/article/S0022-… @YitangS @yekaixiong @CharlestonCWKC @ASBMB

LetPub's tweet image. Latest publication in @jlipidres “Widespread but moderate genetic overlap between circulating polyunsaturated fatty acids and brain disorders” by @xx_huifang et al. jlr.org/article/S0022-… @YitangS @yekaixiong @CharlestonCWKC @ASBMB


Saurav Choudhary reposted

It is a major PhD project of @YitangS. I am very excited to see this work out. I learned so much about the genetics of circulating fatty acids. This is a solid foundation for more research to come regarding gene-diet interactions for omega-3 and omega-6 fatty acids.

The latest @HGGAdvances article from @yekaixiong & colleagues reports the results of a genome-wide association study that identifies additional genetic loci for 19 circulating fatty acid traits in UK Biobank participants of European ancestry: cell.com/hgg-advances/f… #ASHG

GeneticsSociety's tweet image. The latest @HGGAdvances article from @yekaixiong & colleagues reports the results of a genome-wide association study that identifies additional genetic loci for 19 circulating fatty acid traits in UK Biobank participants of European ancestry: cell.com/hgg-advances/f… #ASHG
GeneticsSociety's tweet image. The latest @HGGAdvances article from @yekaixiong & colleagues reports the results of a genome-wide association study that identifies additional genetic loci for 19 circulating fatty acid traits in UK Biobank participants of European ancestry: cell.com/hgg-advances/f… #ASHG
GeneticsSociety's tweet image. The latest @HGGAdvances article from @yekaixiong & colleagues reports the results of a genome-wide association study that identifies additional genetic loci for 19 circulating fatty acid traits in UK Biobank participants of European ancestry: cell.com/hgg-advances/f… #ASHG


Saurav Choudhary reposted

Zero-shot evaluation reveals limitations of single-cell foundation models genomebiology.biomedcentral.com/articles/10.11…

razoralign's tweet image. Zero-shot evaluation reveals limitations of single-cell foundation models genomebiology.biomedcentral.com/articles/10.11…

Saurav Choudhary reposted

We will be at #ASHG24 next week. Multiple students from the lab will be presenting their research. Look forward to it!

yekaixiong's tweet image. We will be at #ASHG24 next week. Multiple students from the lab will be presenting their research. Look forward to it!
yekaixiong's tweet image. We will be at #ASHG24 next week. Multiple students from the lab will be presenting their research. Look forward to it!

Saurav Choudhary reposted

This

tunguz's tweet image. This

Saurav Choudhary reposted

Spatial omics have lit up life science and this new review @CellCellPress is the best I've seen cell.com/cell/fulltext/… open-access

EricTopol's tweet image. Spatial omics have lit up life science and this new review @CellCellPress is the best I've seen
cell.com/cell/fulltext/… open-access
EricTopol's tweet image. Spatial omics have lit up life science and this new review @CellCellPress is the best I've seen
cell.com/cell/fulltext/… open-access

Saurav Choudhary reposted

A benchmark of single-cell ATAC-seq analysis packages. genomebiology.biomedcentral.com/articles/10.11…


Saurav Choudhary reposted

Very excited to share our primer on LLM for biology @naturemethods! We discuss how to use: ⚡️human & protein LMs (eg #ESM) ⚡️#singlecell & #multimodel LMs ⚡️when to fine-tune, transfer learn etc. Paper nature.com/articles/s4159… Colab tutorial colab.research.google.com/drive/1zIIRGeq… Written for a…

james_y_zou's tweet image. Very excited to share our primer on LLM for biology @naturemethods! We discuss how to use:
⚡️human & protein LMs (eg #ESM)
⚡️#singlecell & #multimodel LMs
⚡️when to fine-tune, transfer learn etc.
Paper nature.com/articles/s4159…
Colab tutorial colab.research.google.com/drive/1zIIRGeq…
Written for a…

Saurav Choudhary reposted

Excited to share our study on fish oil supplements modifying genetic effects on lipids, now published in @AJCNutrition: doi.org/10.1016/j.ajcn…. Thanks to all co-authors!

This is a news report on our recent study published on @AJCNutrition doi.org/10.1016/j.ajcn… led by @YitangS



Saurav Choudhary reposted

I'm sharing a public version of my talk slides @UCLA_CGSI two weeks ago - an update from my #LLMs #compbio Primer talk last year - w/ a focus on genomics FMs (DNA, scRNA). As we're exploring related topics, we remain very interested but also skeptical. 1/3 cs.cmu.edu/~jianma/talks/…

jmuiuc's tweet image. I'm sharing a public version of my talk slides @UCLA_CGSI two weeks ago - an update from my #LLMs #compbio Primer talk last year - w/ a focus on genomics FMs (DNA, scRNA). As we're exploring related topics, we remain very interested but also skeptical. 1/3 cs.cmu.edu/~jianma/talks/…

Saurav Choudhary reposted

Pangene now published in Bioinformatics: doi.org/10.1093/bioinf…. In addition to showcasing applications (see the 17q21.31 inversion below), we also reviewed the theoretical formulation of bidirected graphs and discussed the definition and the finding of "bubbles" in such graphs.

lh3lh3's tweet image. Pangene now published in Bioinformatics: doi.org/10.1093/bioinf…. In addition to showcasing applications (see the 17q21.31 inversion below), we also reviewed the theoretical formulation of bidirected graphs and discussed the definition and the finding of "bubbles" in such graphs.

Preprint on Exploring gene content with pangenome gene graphs: arxiv.org/abs/2402.16185. It describes pangene for building gene graphs and for calling gene-level variations which can be found at pangene.bioinweb.org. Pleasant collaboration with @maxgmarin and @MahaFarhat.



Saurav Choudhary reposted

Our study of the gene-vegetarianism interaction effects on 30 blood biomarkers is formally published on #PLOSGenetics dx.plos.org/10.1371/journa…


Saurav Choudhary reposted

Takeaways: 1) Elections are fair; 2) EVMs are not rigged; 3) Threatening civil war is stupid - it’s an election not a war; 4) exit polls are great fun but the real thing is the actual result; 5) we are back to coalitions and we can forget about any serious reforms - economic or…


Saurav Choudhary reposted

Genome assembly in the telomere-to-telomere era go.nature.com/4aLqIED #Review by Heng Li @lh3lh3 & Richard Durbin @richard_durbin @DanaFarber @HarvardDBMI @Cambridge_Uni


Saurav Choudhary reposted

I'm delighted to release the first half of my new open-access online textbook in human population genetics: web.stanford.edu/group/pritchar…

jkpritch's tweet image. I'm delighted to release the first half of my new open-access online textbook in human population genetics:
web.stanford.edu/group/pritchar…

Saurav Choudhary reposted

Does single-cell data increase probability of success in drug discovery and clinical success? 🧐 Drug targets backed by single-cell data triple the chances of a target reaching phase III, when combined with genetic data 🎯 Read the pre-print of this brilliant study by @sanofi


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