JBrowse
@usejbrowse
News and updates from the JBrowse dev team. https://genomic.social/@usejbrowse
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We just released JBrowse v2.11.0 with new feature "Color by CDS" to help see which translation frame is used in the gene glyphs, and new Hi-C "color schemes" and log-transformed display jbrowse.org/jb2/blog/2024/…
Today's evening workshop on @Xenbase was given by @ZornLab Christina and Aaron! Great to see the new features of @usejbrowse 2.0 and integration of @NCBI GEO tracks w. Genome assembly 10.1 🤩🐸
How does Pombase use resources effectively? With a little help from our friends...@rcsbPDB @news4go @rhea_db @MonarchInit @alliancegenome @usejbrowse @yeastgenome @uniprot @InterProDB @Micropub7n Thread/ academic.oup.com/genetics/artic…
JBrowse v2.10.2 released, with a new feature to launch the breakpoint split view directly from raw reads jbrowse.org/jb2/blog/2024/…
TreeGenes & #CartograPlant will be presenting in #Forest Tree (Sunday) & Digital Tools (Monday) - integrated analytics for #popgen studies - #genotype, #phenotype, & envionmental data for all plants! @TripalProject @gmodproject @fairdata #hpc @usejbrowse #PAG31 @PAGmeeting
In ~30min (10am EST) we will have our last community meeting of the year. Video call link meet.google.com/uti-xsjf-xbu
JBrowse v2.10.0 released, featuring a new file format called PIF ("pairwise indexed mapping format") that allows for indexed access to PAF files! Release notes here jbrowse.org/jb2/blog/2023/…
JBrowse v2.9.0 released, with new "Recently used tracks" and "Favorite tracks" panels jbrowse.org/jb2/blog/2023/…
Our first community call was great, thanks to everyone who joined! We had 5 total people including 3 core team members :) Our second community meeting today, 5pm Pacific! Join meet.google.com/rnq-exdt-tuz
First community meeting ETA ~30min! Video call link: meet.google.com/uti-xsjf-xbu
JBrowse v2.8.0 released with a new feature for rendering SVs with arcs for VCF and BEDPE files. See release notes jbrowse.org/jb2/blog/2023/…
New blog post: Office hours and community meetings with the JBrowse 2 team! jbrowse.org/jb2/blog/2023/…
jbrowse.org
Office hours and community meetings | JBrowse
This is a special announcement that we starting a new outreach effort for our
v2.7.2 released, with a "universal" macOS build for jbrowse desktop, which should have improved performance for M1/M2 Macs jbrowse.org/jb2/blog/2023/…
jbrowse.org
v2.7.2 Release | JBrowse
This creates a universal build for macOS allowing improved performance on M1
Just released v2.7.0, featuring new persistent bookmarks, new keyboard shortcuts, React 18, and lots of smaller bugfixes and improvements! See jbrowse.org/jb2/blog/2023/…
jbrowse.org
v2.7.0 Release | JBrowse
This release contains a number of new features and improvements
Releasing our guide to extending 3'UTRs using #peaks2utr github.com/Squalomix/utr-… There could be better solutions, but we believe this is a handy way wroth testing. This activity will be briefly introduced at the upcoming #zsj94 conference. #NBRPメダカ #動物学会 @10xGenomics
We just released v2.6.1 which contains a new NPM package @jbrowse/react-app which allows NPM installation of the full jbrowse web app. Also contains lots of bugfixes and improvements, see release notes! jbrowse.org/jb2/blog/2023/…
The main @usejbrowse 2 paper went live today @GenomeBiology 🧬 It was a true pleasure being a part of this team. I'm really proud of all of the crazy advances that we shipped. New views for synteny, dotplots, breakpoints, gene fusions, whole-genome overviews, and much more.
I am happy to announce that the #JBrowse2 paper has be published in Genome Bio. There is lots of cool stuff: synenty, structural variation, plugins, multi chromosome and multi genome views, a graphical configuration editor, a desktop and easy-to-embed apps genomebiology.biomedcentral.com/articles/10.11…
JBrowse v2.4.0 released, with new dark theme and SVG export capability added to the circular, synteny, and dotplot views jbrowse.org/jb2/blog/2023/…
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