#transcriptome search results
Interested in #phylogenetics using whole #genome/#transcriptome/#proteome data? @C__Hahn and I are very happy to share phylociraptor with you: It facilitates explorative and reproducible phylogenomic analyses of thousands of genes and genomes. Preprint: tinyurl.com/yc4f7v6d
Fabulous & fascinating talk as always by @LucyKornblith at #THOR2023 on the curious case of the platelet in trauma and what’s happening with the platelet #transcriptome - always a delight to learn from you, Lucy!
Whole Transcriptome Scanning! Integrated #Transcriptome Analysis of #lncRNA, #miRNA, and #mRNA Reveals key Regulatory Modules for #Polycystic #Ovary Syndrome #phenomics link.springer.com/article/10.100…
📢 We are looking for a motivated candidate for a fully funded #PhD to analyze the #transcriptome of polyploid cells from tomato fruit 🍅 at the single cell level #scRNAseq @INRAE_BFP @nathy_go_7 Info here 👇 jobs.inrae.fr/ot-22230
📰| #InstitutesPCUV 🧬🔬I2SysBio co-leads the largest comparative study on methods analyzing data obtained by long-read sequencing of the human #transcriptome. Read more ⬇️ news.pcuv.es/en/home-pcuv-i…
New in @The_InnovationJ! A high-definition spatiotemporal transcriptomic atlas of mammalian kidney development. Jiang et al. present a spatially resolved #transcriptome atlas at single-cell resolution to explore the establishment and maintenance of #kidney structure in mice…
IMPRS retreat kicks off with a great talk by @torbenheick on #RNA turnover and #transcriptome quality control. #science #phdlife
Co-chair @LesleyRGolden @universityofky presenting their work on mid-life #APOE4 to #APOE2 ‘Switching’ alters the cerebral #transcriptome and decreases AD neuropathology #ISMNDNextGen
Measuring natural selection on the #transcriptome 📖 nph.onlinelibrary.wiley.com/doi/10.1111/np… Viewpoint article by Stinchcombe and Kelly @JohnStinchcombe @WileyPlantScience #PlantScience
Join us @BioCAT_Poz & @UAM_IBMiB seminar by Evegenia Nitini's @evgenia_ntini from @IMBB_FORTH on the modelling of the nascent #RNA #transcriptome and resulting insights on processing of long non-coding RNAs and #enhancer transcription!
New in #G3journal: @yanjunzan and the team reanalyzed #transcriptome data from thousands of #maize panels to uncover the genetics underlying maize complex traits, and built a multi-tissue regulatory atlas for functional validation and genomic improvements. buff.ly/lmrsmHC
Excellent 👏 #KeynoteSpeaker @fdinicolantonio #genomic and #transcriptome #colorectal #cancer signatures @myESMO #cancerresearch #ESMOAmbassadors #ESMOGI25
#Heterosis works—but how? Liu et al. tackle this question in new research combining #transcriptome, #proteome, #physiological, and heterosis analyses to study #salt response in super hybrid #rice. doi.org/10.1111/jipb.1… @wileyplantsci #PlantSci #JIPB #CropSci
New in the September issue of #G3journal: @yanjunzan and the team reanalyzed #transcriptome data from thousands of #maize to uncover the genetics underlying maize complex traits, and built a multi-tissue regulatory atlas for functional validation. buff.ly/bQMa6Gs
New research in #GENETICS provides new insights into the origin and early evolution of de novo genes by leveraging large-scale #transcriptome data from different #Drosophila genotypes. 🪰 Read more: buff.ly/Jwt8jjP
Carefully planned trajectory analysis using #UMAP embeddings can help identify key #transcriptome changes. In this example from BioRxiv lnkd.in/eMW2xuZu, were we identified IFN expressing CD14+ monocytes associated with high risk. @theMMRF @SinaiImmunol @IcahnMountSinai
Comprehensive analysis of 1,771 transcriptomes from 7 tissues enhance genetic and biological interpretations of maize complex traits. #MaizeTraits #Transcriptome #G3 academic.oup.com/g3journal/adva…
CSO @joebeechem highlights how CosMx scales whole #Transcriptome from 1k to 19k genes with no nonlinearities, still 38nm ±11nm #SpatialBiology resolution. Plus, a 19X gene content increase with only ~2X #TurnAroundTime @brukerspatial #BrukerSpatialBiology #AGBT2025”
Congratulations to Yu Wu @AzzByp on her successful #TIGP PhD defense! Co-advised by @erhminlai & me (and also unofficially by @AdamWu9527), Yu made nice progress on #Agrobacterium #transcriptome. The first part of her thesis is available as a preprint: doi.org/10.1101/2025.0…
"#Transcriptome analysis of classical #blood cells reveals #downregulation of pro-#inflammatory #genes in the classical monocytes of #longCOVID patients" #PASC #PCS #PEM #PESE
Transcriptome analysis of classical blood cells reveals downregulation of pro-inflammatory genes in the classical monocytes of long COVID patients 🔥Monocytes might be dysregulated and/or exhausted in patients with long COVID: aka #Leonardi_effect ➡️Small, difficult, but very…
1/ We conducted one of the largest whole-#transcriptome studies, analyzing 300 #MDD patients. #TRD patients showed global transcriptomic changes involving immune, epigenetic, and non-coding RNA dysregulation.
Explore : *** Overview of multi-omics data. Multi-omics data include #Genome, #Transcriptome, #Epigenome, #Proteome, #Exposome and #Microbiome. *** , Investigate Figure pmc.ncbi.nlm.nih.gov/articles/PMC87…, report overview @grok
#VegetableRes First transcriptome of sweet pitaya peel reveals genes for cuticle biosynthesis, key for water retention in the desert cactus fruit. @MaximumAcademic @PlantPhys #Cactus #Transcriptome Details: maxapress.com/article/doi/10…
We conducted one of the largest whole-#transcriptome studies, analyzing 300 #MDD patients. The findings suggest that #TRD represents a distinct molecular subtype characterized by unique #immune and #epigenetic signatures. Here the article 👇 sciencedirect.com/science/articl…
New in the September issue of #G3journal: @yanjunzan and the team reanalyzed #transcriptome data from thousands of #maize to uncover the genetics underlying maize complex traits, and built a multi-tissue regulatory atlas for functional validation. buff.ly/bQMa6Gs
A research team published their findings in Horticulture Research. The study investigated how non-photosynthetic grapevine cells adapt to glucose deprivation. #DNA methylation #Transcriptome Details: doi.org/10.1093/hr/uha…
New in #G3journal: @yanjunzan and the team reanalyzed #transcriptome data from thousands of #maize panels to uncover the genetics underlying maize complex traits, and built a multi-tissue regulatory atlas for functional validation and genomic improvements. buff.ly/lmrsmHC
🐟#HighlyCited Cardiac #Transcriptome and Histology of the Heart of the Male Chinese Mitten #Crab (Eriocheir sinensis) under High-Temperature Stress 👉mdpi.com/2410-3888/9/3/… 🦀#heatshockprotein #histology #immune
#ForestryRes #transcriptome #salt #ethylene Nitraria sibirica thrives under salt stress, showing higher growth and photosynthesis rates. Transcriptome analysis reveals upregulated genes involved in carbon fixation. 🧬 @MaximumAcademic @JournalNJFU Details: maxapress.com/article/doi/10…
ICAR–IASRI is organizing an Online Training on Transcriptomic Data Analysis during September 23–29, 2025. Develop applied expertise in bioinformatics tools. Apply: forms.gle/5p7Q2T1cGJka2r… more details, please see: iasri.res.in/API/Content/Up… #icar #Transcriptome #DataAnalysis
Molecular dissection of Xinong 511 spike rachis response to Fusarium head blight infection Xiaoying Yang, Maoru Xu ... Chunhuan Chen, Wanquan Ji link.springer.com/article/10.100… #FHB #transcriptome #DiseaseResistance #PlantImmunity
🌸 What controls #flower formation in Camellia oleifera? New study reveals GA dynamics + FT–LFY module drive floral initiation in tea-oil tree buds 🧪 #Transcriptome + #hormone profiling = insights into key flowering genes 🔗 brnw.ch/21wUI9v #FloralDevelopment
Using integrated #transcriptome and proteome analyses, scientists from @EmoryMedicine identified and validated eight novel non-classical #CDMarkers that help characterize #MesenchymalStemCells and potentially discriminate #iMSCs from other cell types. @stmcdr #OpenAccess:…
Greehey CCRI PI, Gail Tomlinson, MD, PhD, co-authored a recent paper in #CancerEpidemiologyBiomarkersPrevention (@AACR), "#Multiancestry #Transcriptome-Wide Association Study Identifies Candidate #Genes Associated with #Hepatoblastoma." tinyurl.com/mwb94ahp #ChildhoodCancer
🌺 How does Camellia azalea flower in summer? Xu et al. uncover the transcriptomic & hormonal shifts driving its floral development, integrating gene expression & phytohormone analysis. 📖 brnw.ch/21wUyVn #Camellia #PlantMolecularBiology #Transcriptome #Flowering
In a study published in Horticulture Research, researcher performed full-length transcriptome sequencing on chili pepper tissues at five growth stages. #plant developmental biology #transcriptome sequencing Details: doi.org/10.1093/hr/uha…
Interested in #phylogenetics using whole #genome/#transcriptome/#proteome data? @C__Hahn and I are very happy to share phylociraptor with you: It facilitates explorative and reproducible phylogenomic analyses of thousands of genes and genomes. Preprint: tinyurl.com/yc4f7v6d
Article by @Miriam_science et al @arbona_vicent @rosarivar @CebasPlant @ThePlantJournal @SEBiology @wileyplantsci Specific #ABA-independent #tomato #transcriptome reprogramming under #abiotic stress combination onlinelibrary.wiley.com/doi/10.1111/tp… #PlantSci @BigPurpleTomato @transcriptomes
Centrohelid #heliozoan #transcriptome: no flagellar genes (not surprising) MT-severing proteins and kinesin duplication (cool! probably a role in superfast contraction). Ikeda et al. 2022 10.1111/jeu.12955; picture Ikeda et al. 2020 10.4467/16890027AP.20.001.12157.
#Heterosis works—but how? Liu et al. tackle this question in new research combining #transcriptome, #proteome, #physiological, and heterosis analyses to study #salt response in super hybrid #rice. doi.org/10.1111/jipb.1… @wileyplantsci #PlantSci #JIPB #CropSci
We developed LSTrAP-denovo, a pipeline for generating transcriptome atlases for species without a genome. All you have to do is to enter the tax ID of your species of interest... #transcriptome #assembly #CDS
📢#CallForPapers on Integrative Physiology and Translational-Omics of Exercise and Physical Activity! ow.ly/ZmzX50Px0Yl #transcriptome #microbiome #metabolome #proteome #epigenome #AcademicTwitter
Measuring natural selection on the #transcriptome 📖 nph.onlinelibrary.wiley.com/doi/10.1111/np… Viewpoint article by Stinchcombe and Kelly @JohnStinchcombe @WileyPlantScience #PlantScience
Fabulous & fascinating talk as always by @LucyKornblith at #THOR2023 on the curious case of the platelet in trauma and what’s happening with the platelet #transcriptome - always a delight to learn from you, Lucy!
Amazing paper title for an amazing paper: "The swan #genome and #transcriptome, it is not all black and white" #biology #science #evolution #omics 🔗: genomebiology.biomedcentral.com/articles/10.11…
IMPRS retreat kicks off with a great talk by @torbenheick on #RNA turnover and #transcriptome quality control. #science #phdlife
📢 We are looking for a motivated candidate for a fully funded #PhD to analyze the #transcriptome of polyploid cells from tomato fruit 🍅 at the single cell level #scRNAseq @INRAE_BFP @nathy_go_7 Info here 👇 jobs.inrae.fr/ot-22230
New in @The_InnovationJ! A high-definition spatiotemporal transcriptomic atlas of mammalian kidney development. Jiang et al. present a spatially resolved #transcriptome atlas at single-cell resolution to explore the establishment and maintenance of #kidney structure in mice…
New research in #GENETICS provides new insights into the origin and early evolution of de novo genes by leveraging large-scale #transcriptome data from different #Drosophila genotypes. 🪰 Read more: buff.ly/Jwt8jjP
Co-chair @LesleyRGolden @universityofky presenting their work on mid-life #APOE4 to #APOE2 ‘Switching’ alters the cerebral #transcriptome and decreases AD neuropathology #ISMNDNextGen
In the next #plenary our invited speaker @anaconesa will discuss the potential and challenges of using single-molecule long-read sequencing for #transcriptome analysis and #genome annotation🧬 Join us to learn more! bit.ly/3qClsB2 @Conesa_Lab @BioGenEurope @i2sysbio
Comprehensive analysis of 1,771 transcriptomes from 7 tissues enhance genetic and biological interpretations of maize complex traits. #MaizeTraits #Transcriptome #G3 academic.oup.com/g3journal/adva…
Today @AROMWM come and learn about the #transcriptome and #epigenome of the human #innerear sensory and non-sensory epithelia using @10xGenomics Multiome. Poster SA80 presented by @EmiliaLuca_PhD @Sunnybrook @UofT_OHNS @uoftmedicine @LMP_UofT #ARO2023
Nice paper: Transcriptome and Low-Affinity Sodium Transport Analysis Reveals Salt Tolerance Variations between Two Poplar Trees (2023) mdpi.com/1422-0067/24/6… @IJMS_MDPI #plants #transcriptome
Congratulations to Yu Wu @AzzByp on her successful #TIGP PhD defense! Co-advised by @erhminlai & me (and also unofficially by @AdamWu9527), Yu made nice progress on #Agrobacterium #transcriptome. The first part of her thesis is available as a preprint: doi.org/10.1101/2025.0…
Luo et al. use comparative #transcriptome analysis with isolated two-celled #proembryos to explore the potential regulatory network underlying NtCP14-triggered programed #cell death in #embryos. doi.org/10.1111/jipb.1… @wileyplantsci #PlantSci #JIPB #plant #development…
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