Mahesh Binzer-Panchal
@arcane_mahesh
Bioinformatician for the National Bioinformatics Infrastructure Sweden, specializing in de novo genome assembly, and working reproducibly w. Nextflow workflows.
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I am super excited to share our latest preprint with @yhhshby, @IgorMartayan, and Lucas Robidou on k-mer representations, introducing Hyperkmer and a novel k-mer counter, KFC! biorxiv.org/content/10.110… 🧵 A thread:
Hyper-k-mers: efficient streaming k-mers representation biorxiv.org/content/10.110…
We’re still energized from our incredible experience at #NextflowSummit in Barcelona! 🎉 Here are a few highlights: 📣 Inspiring talks — 30+ sessions on the latest @nextflowio breakthroughs and innovations. Catch the recordings here: hubs.la/Q02Xhkgd0 ✨ Panel on…
The five pillars of computational reproducibility: bioinformatics and beyond academic.oup.com/bib/article/24…
Had a great time at #SBW2024 yesterday - a fab agenda with some really nice talks, and nice to catch up with old friends. @FranBonath aced running her first @nextflowio training workshop (which was heavily oversubscribed!). Thanks @gau for the photo! 📸
Just saying, I'm hiring in Europe right now.
Highlights from the 2024 Nextflow Summit and nf-core hackathon in Barcelona blog.stephenturner.us/p/nextflow-sum…
Missed the #NextflowSummit in Barcelona last week? Don't worry, all the talks are now available on YouTube! 🎉Check them out below 👇 hubs.la/Q02WN70X0 #NextflowSummit
A week of R programming in Sweden 🇸🇪 (Uppsala and Lund). w/ @nimra236, Miguel Redondo, @quiestrho, @VasquezLouella, Lokesh Manoharan, Massimiliano Volpe, and Katja Kozjek. @NBISwe @scilifelab @UU_University @lunduniversity
Announcing the Avian Cells /Chromosomes /Collections Symposium on Dec 09-10 in Bonn! No registration fee and all submitted abstracts on avian development/cellbio/biobanking/evolution will receive a presentation. Abstract submission deadline November 24. genomicrocosm.wordpress.com/acccs-2024/
The Nextflow Summit was a truly amazing event. Blog post coming soon. Awesome science, technically impressive infrastructure updates, and many new friends and colleagues. ¡Nos vemos pronto!
Given the learning curve, I was initially hesitant, but I am officially all-in on @nextflowio for bioinformatics workflows. It's wonderful when a tool is clearly written by and for its target audience.
📢 Did you catch that? One last thing: the official launch of @openscisoftware, a non-profit foundation dedicated to supporting open source scientific tools, promoting accessibility and free availability of resources to the global scientific community. 🧬 More information coming…
Packing list for the #NextflowSummit social 👻🎃: 🐥 Halloween costume 🥸 50 stick-on moustaches 🤠 20 fluorescent cowboy hats Happy to say that every single moustache and hat went to good use 😂 @nextflowio / @nf_core communities - you all rock! 🤘🏻🤣
Highly accurate assembly polishing with google/DeepPolisher & PHAROAH biorxiv.org/content/10.110… 🧬🖥️ github.com/google/deeppol… and github.com/miramastoras/P…
We are thrilled to announce the release of a new major version of the #Nextflow VSCode Extension! 🚀 The #Nextflow VSCode extension now offers a modern developer experience with: 🔹 Precise errors and warnings 🔹 Syntax highlighting and auto-formatting 🔹 Code navigation 🔹…
We're delighted to release the new @nextflowio extension for #VSCode! We just released a new blog post describing the key features, or follow these tweets to see some of the highlights 🔍 hubs.la/Q02Ws-r00
For anyone who has struggled with code navigation of the nested @nf_core shared modules, rejoice! The new @nextflowio #VSCode extension code navigation makes this super fast! 🎉
Powerful code navigation features let you (alt/ctrl) + click on imports, processes and workflows to go directly to their definition. This means you no longer need to dig through the file navigation to see where the code is being defined!
Vanity / red teaming. "Who is Stephen Turner?" "Tell me some jokes about nf-core/sarek"
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