Daniel Beiting
@hostmicrobe
Scientist working at the intersection of immunology, microbiology and genomics. Associate Professor @PennVet. Tech. Dir. of CHMI. Tweets are my own.
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Excited to announce the beta release of our new MicrobiomeDB R package! This package is intended to be companion to our @microbiomeDB website and provides convenient, programmatic access to all of our curated 16S and shotgun metagenomic datasets. #microbiome #rstats #dataviz
Cryptosporidium genetics really works! Latest cross explains why tb drug failed in crypto clinical trial. Widespread genomic heterogeneity at the type II NAD(P)H dehydrogenase locus predisposes Cryptosporidium to clofazimine resistance @millseba biorxiv.org/content/10.110…
A top staffer to Sen. Tina Smith emailed Sen. Mike Lee’s top staffers on Monday about “how much additional pain you’ve caused on an unspeakably horrific weekend” Full email below
Due to the #trumptarrifs, @Illumina announces surcharges on all consumables (5%), instruments (2-9%) and services (3.5%). A big hit to labs that are already struggling to do genomics work in an environment with severely reduced federal funding bit.ly/3GHu6GE
Thanks so much for involving me in this event Daniel!
There are days in life that shake you. I’m shattered 💔 to share that I just found out that the US Government terminated my 2024 NIH Director’s Early Independence Award (~$2 million), threatening my long-promised assistant professor job at @Columbia & academic career... 1/🧵
Very excited to team up with @MichaelEMann to host @PeterHotez at @pennvet this evening for a public lecture on vaccination in a time of rising anti-science rhetoric and policies.
Fun personal note: shoutout to @hostmicrobe for sparking my interest in single-cell analysis. Much progress since @MBLBoP 2022, but it all began one summer evening in the lab exploring parasite single-cell data. Inspirational teacher :)
Loving the vibe over at Bsky🦋! More science. Less cesspool. Starter packs make it easy to connect with colleagues If ur new to🦋, I thought this article was a nice breakdown of why it might be a platform that is better/different than this place bit.ly/41gHaev
Farming a single Atlantic salmon can require killing and processing over 1,000 wild school fish like anchovies — critical prey for sea lions, sea birds, penguins, and whales. Cool to see journalists visualize their own interpretations of our data:
Fish farming is supposed to give overexploited oceans a break. But a new study finds that it may be taking way more fish out of oceans to feed farmed fish than previously thought. New story of mine up on Vox today, replete with new charts: vox.com/future-perfect…
Thx @hostmicrobe ☺️ Your incredible contribution and collaborations were hugely impactful on the lab 👏 and generations of trainees learning high quality transcriptomic analysis including R from scratch giving trainees the power, skills, and confidence to dive into their data 🤯
Huge congrats to @EJohnWherry (@pennmedicine) and @TheBaleLab (formerly @pennvet and now at @CUAnschutz) on their recent election to the National Academy of Medicine! Grateful for their mentoring, collaboration, and friendship over the years.
Six Penn experts have been elected to the National Academy of Medicine for their groundbreaking contributions to cardiology, nursing, health justice, and more. Read more below: spr.ly/6017qxqI1
We are hiring for a wetlab research association position! Check it out to learn more about our lab's focus in single-cell genomics, multimodal/spatial analysis, and genome engineering. Apply/learn more at jobs.silkroad.com/NYGenome/Caree… or DM me a copy of your CV!
This would allow seniors to keep billions of dollars of their retirement, remain independent longer, not burden their children with providing care, and means money left to pass on instead of their inheritance going to the owners of nursing homes. It builds generational wealth.
The Nobel prize website has a pretty well made 1-pager on how Alphafold works
ngl, going from game dev to Nobel prize in Chemistry is a goated career trajectory
Demis Hassabis, awarded the 2024 #NobelPrize in Chemistry, was born in 1976 in London, UK. He earned his PhD in 2009 from @UCL, UK. Hassabis is currently the CEO of @GoogleDeepMind, London, UK. deepmind.google/about/
Washington hasn’t stopped dreaming
Published in 2009, bwa-aln is one of the oldest short-read aligners. It remains a popular choice for aligning ancient DNA reads. The following blog post explains the algorithmic reasons. lh3.github.io/2024/09/28/why…
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