Scot Federman
@sfederman
Bioinformaticist at the University of California, San Francisco. Bostonian at heart. @[email protected]
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On Friday, the sun put on a dazzling show for us. My friend @TheVastReaches and I worked hard over the last 5 days to produce this incredibly detailed 140 megapixel image to illustrate how wonderfully dynamic and beautiful our star can be. Make sure you zoom in!
Natural Bridges in Santa Cruz?
A volcano eruption from the International Space Station source: gfycat.com/ru/euphoricsec…
7 months after drawing this cartoon my Nigels are finally at work with some of that sparkly mRNA.
It’s fun to revisit old memories when looking through your laptop’s WiFi networks.
Wonder if they have tried a quick reversal of the current?
A response from the Biden administration to my plea for testing & genomic sequencing resources: “We need some sort of leadership...implemented on a national level....without...dedicated support, it’s simply not going to get done..." nytimes.com/2021/01/06/hea…
No words needed. That's what vaccines do.
I don’t know about you, but I’m finding it hard to balance the need to grieve and the urge to fight in this sad moment
Our paper about SARS-CoV-2 introductions into Northern California was recently published. We show how rapid sequencing complements epidata to allow us to identify outbreak clusters even when genetic diversity is low. 1/3
Analysis of #SARSCoV2 genomes from a small number of #California-based patients suggests CA's #COVID19 epidemic is less from community spread of the virus & more from introductions from state-to-state & international travel. fcld.ly/uycuaxm
Our paper on early SARS-CoV-2 introduction and spread into Northern California is now out in Science! Thanks to @UCSF @CDPublicHealth @CDCgov @SCCgov @SF_DPH @EvolveDotZoo and many others for a truly collaborative effort.
Analysis of #SARSCoV2 genomes from a small number of #California-based patients suggests CA's #COVID19 epidemic is less from community spread of the virus & more from introductions from state-to-state & international travel. fcld.ly/uycuaxm
The World Health Organization (WHO) announced that dogs cannot get Covid-19. Dogs can be released from quarantine. I guess you could say that "WHO let the dogs out" who.int/emergencies/di… #dadjokes
Our spiked primer paper is out at @NatureMicrobiol ! Useful for RNA viral metagenomic sequencing & assembly - Ebola, Zika, Lassa, etc. Thanks to all for a global collaborative effort! @CAPublicHealth @UCSF @ibt_unam @inrb_kinshasa @AbbottNews nature.com/articles/s4156…
Together with @dmaccannell and @CDC_AMD, and on behalf of @pha4ge, we've put together 10 recommendations for supporting open pathogen genomic analysis in public health. You can read a preprint of the whitepaper here: preprints.org/manuscript/202…. 1/6
echo 'Hello, my username is imontoya, you kill -9 my $PPID, prepare to vi.'
Welcome to Greninger Lab. Our lab focuses on the genomics of infectious diseases and metagenomics. Specifically, we are expanding reference genomic databases through first genomes of bugs and viral discovery to study the crazy evolutionary pressures we put on viruses.
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