#spatiallibd search results

I'm excited to present tomorrow about #spatialLIBD & analysis of spatially-resolved transcriptomics #Visium data with #rstats & @Bioconductor tools Thanks for inviting me @FLGenomics! Check 👀 the slides here 👇🏽 speakerdeck.com/lcolladotor/fo… @LieberInstitute @jhubiostat @10xGenomics

Sure, check research.libd.org/spatialDLPFC/#…. Available via Globus and the @NIMHgov Data Archive (NDA) Processed data for both projects is also available through #spatialLIBD::fetch_data()

4) We’ve shared this data with the scientific community through interactive web tools and our R package #spatialLIBD @Bioconductor #OpenScience #OpenData 🔗research.libd.org/spatialDLPFC/

Check out the updates to #spatialLIBD that Nick-Eagles (@github) introduced to the latest version available from @Bioconductor 3.19 release Visualize multiple genes with the #spatialLIBD::vis_gene() family of functions research.libd.org/spatialLIBD/ar… #rstats youtu.be/_dBPZ62t40c

If you haven't registered for #FoGBoston you can do so for free at hubs.la/Q01MkQpf0 See you soon in Boston, MA, USA! #spatialLIBD #Visium #spatialomics

¡Felicidades Keri @martinowk! The #spatialLIBD team has benefited a lot from your ideas, orchestration, insights, leadership, and support! Also many at @LieberInstitute have benefited from your role as Head of Education & Training Programs Thanks again Keri! Kudos to you!! 👏🏽

Hehehe See how I used the #paletteer 📦 in #spatialLIBD. I got tired of people asking for plots with X or Y color :P github.com/LieberInstitut… to 129 & elsewhere For more: github.com/EmilHvitfeldt/… & emilhvitfeldt.github.io/r-color-palett… By @Emil_Hvitfeldt are great 🤩

My #rstats stickers stash is starting to run low. I last printed stickers around March 2020 Maybe it’s time to print some more @RLadiesBmore @CDSBMexico ones. Hmm… + #spatialLIBD & other ones from our packages 📦 What else? Are there any @stickermule discounts for #rstats?

I liked how #tidyomics is compatible with #plotly. Looks like I’ll be able to avoid some more complicated code at #spatialLIBD. Like lines 608 to 633 at github.com/LieberInstitut… where I want to use highlight_key() @steman_research @mikelove #BioC2023

But actually come checkout my #spatialDLPFC poster this afternoon for even more #spatialLIBD content 😁 #BioC2023

Lots of brain slides at the #BioC2023 spatial session 👀🧠 Join @lcolladotor and I at 2pm for our #spatialLIBD workshop to learn to access this ✨all-star dataset✨ and about our spatial transciptomics tools!

I also got the opportunity to work with really cool @Bioconductor packages such as #BayesSpace and #spatialLIBD to perform layer registration of gene unsupervised clusters to known-layer-marker-gene expression.

Looking forward to #BioC2023 ! @lcolladotor and I will be demoing the #spatialLIBD package 💻🔧 and I will be presenting new data and findings in my poster on #spatialDLPFC 🧠🧬 from our preprint 👩‍🔬 🔗doi.org/10.1101/2023.0…

Thank you #GBD23 @MinaRyten @LabGandhi John Hardy 🇬🇧 for hosting us!🙌🏽 Hopefully our #deconvochallenge #spatialLIBD #spatialDLPFC #Visium_SPG_AD work + @Bioconductor 📦s + @10xGenomics @LieberInstitute data will be useful to you @eventsWCS @UCLchildhealth @TheCrick @UCLIoN @ucl

Keep an eye on #spatialLIBD - a bioconductor package and shiny web application for #spatialtranscriptomics analysis (presented yesterday by @lahuuki @lcolladotor @LieberInstitute research.libd.org/spatialLIBD/ ) @UCLchildhealth

For our last seminar 🇬🇧 trip, on Thursday May 25 @lahuuki & I will do a joint presentation on "Harnessing the power of spatially-resolved transcriptomics one step at a time" at @UCLIoN 9:30 am @LieberInstitute🧠 #spatialLIBD #spatialDLPFC #Visium_SPG_AD speakerdeck.com/lcolladotor/20…

Excited to be presenting today at the @UCLchildhealth @GGM_ICH @G_T_Hall Computational Biology Club! 👩‍💻 🧬 I will be sharing tools we have developed @LieberInstitute for analysing spatial data in the #spatialLIBD @Bioconductor package 🧠 slides here: speakerdeck.com/lahuuki/thinki…

#Visium_SPG_AD with @sowmyapartybun benefited from simultaneous updates to #spatialLIBD that were also needed for #spatialDLPFC by @lahuuki @abspangler Nick-Eagles et al It wouldn't have been possible without #VistoSeg v2 by @MadhaviTippani + a whole village, thanks everyone!!

I'm excited to share with you @HinxtonHall #GDB2023 our #Visium_SPG_AD work led by @sanghokwon17 💯 @LieberInstitute @10xGenomics @jhubiostat 🏡 research.libd.org/Visium_SPG_AD/ #spatialLIBD: libd.shinyapps.io/Visium_SPG_AD_… #SamuiBrowser: samuibrowser.com/from?url=visiu… 🛝 speakerdeck.com/lcolladotor/gd…

Excited to be presenting today at the @UCLchildhealth @GGM_ICH @G_T_Hall Computational Biology Club! 👩‍💻 🧬 I will be sharing tools we have developed @LieberInstitute for analysing spatial data in the #spatialLIBD @Bioconductor package 🧠 slides here: speakerdeck.com/lahuuki/thinki…

Our paper describing our package #spatialLIBD is finally out! 🎉🎉🎉 spatialLIBD is an #rstats / @Bioconductor package to visualize spatial transcriptomics data. This is especially exciting for me as it is my first paper as a first author 🦑. biorxiv.org/content/10.110… 1/9

Thank you to the #spatialLIBD team at @LieberInstitute & @jhubiostat, @abspangler, @lmwebr, @stephaniehicks, @andrewejaffe,@martinowk, @kr_maynard and @lcolladotor for making this work possible😁. 9/9

Lots of brain slides at the #BioC2023 spatial session 👀🧠 Join @lcolladotor and I at 2pm for our #spatialLIBD workshop to learn to access this ✨all-star dataset✨ and about our spatial transciptomics tools!

We linked data-driven spatial domains, and cell type population back to established anatomy of the tissue with spatial registration 🔗 with tools from #spatialLIBD #Rstats @Bioconductor and built some extra complex #ComplexHeatmap 🫶 @jokergoo_gu

And to our close collaborators @lcolladotor and @stephaniehicks - working with your groups on #spatialLIBD projects has been one of my greatest sources of work joy the past year!

Our latest research builds on the layers of work from #spatialLIBD from @lcolladotor and @kr_maynard where the histological layers of the #DLPFC were manually mapped to #Visium data 🌈

Today I gave my first talk at a congress in #EuroBioc2020 about our work on adapting the package #spatialLIBD to use VisiumExperiment objects.

Kristen @kr_maynard & I are happy to share #spatialLIBD's spatial transcriptomics work at #GBB2022 #G2B22 @IBANGStweets Work by @sanghokwon17 @MadhaviTippani @sowmyapartybun N Eagles @abspangler @HeenaDivecha @lmwebr @mattntran @PardoBree @CerceoPage et al Collab w/@10xGenomics

#spatialLIBD paper just got published! spatialLIBD is an #rstats / @Bioconductor package to interactively explore #SpatialTranscriptomics data This is my first paper as a first author!🧵 doi.org/10.1186/s12864… 1/n

Welcome @PardoBree to the #spatialLIBD team at @LieberInstitute & @jhubiostat ^^ Brenda is my first remote intern =) How did we meet? Through a course I taught at @LIIGH_UNAM + #CDSB2020 @CDSBMexico. Just an example of how these events are useful in recruiting #rstats @lcgunam

#spatialLIBD makes this possible With our package you can: Visualize continuous or categorical variables at the spot level. This means you can look at the expression of genes of interest or your clustering results, and you can add the histology image in the background 4/n

Deployed my first shiny app using #spatialLIBD Big thanks to @lcolladotor for being an amazing mentor and @PhiloNeuroSci #spatialtranscriptomics #visium @10xGenomics

Thank you #GBD23 @MinaRyten @LabGandhi John Hardy 🇬🇧 for hosting us!🙌🏽 Hopefully our #deconvochallenge #spatialLIBD #spatialDLPFC #Visium_SPG_AD work + @Bioconductor 📦s + @10xGenomics @LieberInstitute data will be useful to you @eventsWCS @UCLchildhealth @TheCrick @UCLIoN @ucl

4) We’ve shared this data with the scientific community through interactive web tools and our R package #spatialLIBD @Bioconductor #OpenScience #OpenData 🔗research.libd.org/spatialDLPFC/

I also got the opportunity to work with really cool @Bioconductor packages such as #BayesSpace and #spatialLIBD to perform layer registration of gene unsupervised clusters to known-layer-marker-gene expression.

#spatialLIBD @PardoBree et al and #SpatialExperiment by @drighelli @CrowellHL @lmwebr came out in the meantime ➕#BayesSpace by @edward130603 @raphg #Tangram @tbyanc #Cell2Location @bayraktar_lab #SPOTlight @elosua_bayes and many more followed See @LambdaMoses's museum 📜

Great presentation Lukas @lmwebr !! ^^ #BioC2020 #rstats #spatialLIBD