ExpressionAtlas's profile picture. Expression Atlas and Single Cell Expression Atlas are @emblebi open science resources for #Gene and #Protein Expression. Follow us for release news & tips

Expression Atlas

@ExpressionAtlas

Expression Atlas and Single Cell Expression Atlas are @emblebi open science resources for #Gene and #Protein Expression. Follow us for release news & tips

Pinned

Our latest @NAR_Open update paper is live! 🚀 Dive into the innovative features - query metadata via cell type wheel search, navigate data with tSNE/UMAP, and explore anatomograms & heatmaps. A new level of exploration!🧬🔎#DataScience #Research @emblebi doi.org/10.1093/nar/gk…


🚀 Expression Atlas Release 43 is live! 🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns. 🔎 Plus, a new technology filter for faster dataset discovery. 🔗ebi.ac.uk/gxa @emblebi

ExpressionAtlas's tweet image. 🚀 Expression Atlas Release 43 is live!
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
🔗ebi.ac.uk/gxa

@emblebi

We are looking for an ESPOD postdoctoral fellow in collaboration with @HaniffaLab to develop an Interactive Visualisation and Conversational AI Tools for Spatial Transcriptomics Data. ebi.ac.uk/research/postd… @emblebi @sangerinstitute

Recruitment is now open for the EMBL-EBI–Sanger Postdoctoral (ESPOD) Programme. ESPOD builds on the collaborative relationship between EMBL-EBI and @sangerinstitute, offering projects that combine experimental and computational approaches. ebi.ac.uk/research/postd… #postdocjob

emblebi's tweet image. Recruitment is now open for the EMBL-EBI–Sanger Postdoctoral (ESPOD) Programme.

ESPOD builds on the collaborative relationship between EMBL-EBI and @sangerinstitute, offering projects that combine experimental and computational approaches.

ebi.ac.uk/research/postd…

#postdocjob


Expression Atlas reposted

Interested in spatial transcriptomics, interactive visualisation, and AI? We’re teaming up with @HaniffaLab and @saezlab on Project 5 - for someone keen to build open tools that make complex biological data more accessible! Apply by 30 Sep: ebi.ac.uk/research/pos...

Recruitment is now open for the EMBL-EBI–Sanger Postdoctoral (ESPOD) Programme. ESPOD builds on the collaborative relationship between EMBL-EBI and @sangerinstitute, offering projects that combine experimental and computational approaches. ebi.ac.uk/research/postd… #postdocjob

emblebi's tweet image. Recruitment is now open for the EMBL-EBI–Sanger Postdoctoral (ESPOD) Programme.

ESPOD builds on the collaborative relationship between EMBL-EBI and @sangerinstitute, offering projects that combine experimental and computational approaches.

ebi.ac.uk/research/postd…

#postdocjob


Expression Atlas reposted

Did you attend @iscb's ISMB/ECCB 2025 in Liverpool? Colleagues from across @emblebi (including reps from #Ensembl, @deciphergenomic, @EBItraining, @PDBeurope and @ExpressionAtlas) surely did! What was your highlight of the conference? 🧬

ensembl's tweet image. Did you attend @iscb's ISMB/ECCB 2025 in Liverpool? Colleagues from across @emblebi (including reps from #Ensembl, @deciphergenomic, @EBItraining, @PDBeurope and @ExpressionAtlas) surely did! What was your highlight of the conference? 🧬
ensembl's tweet image. Did you attend @iscb's ISMB/ECCB 2025 in Liverpool? Colleagues from across @emblebi (including reps from #Ensembl, @deciphergenomic, @EBItraining, @PDBeurope and @ExpressionAtlas) surely did! What was your highlight of the conference? 🧬
ensembl's tweet image. Did you attend @iscb's ISMB/ECCB 2025 in Liverpool? Colleagues from across @emblebi (including reps from #Ensembl, @deciphergenomic, @EBItraining, @PDBeurope and @ExpressionAtlas) surely did! What was your highlight of the conference? 🧬

Exciting news! The latest @ExpressionAtlas bulk release is out, featuring 4562 datasets across 67 species. Explore 12 new plant datasets from sorghum, rice, Arabidopsis and maize, 🌾🌽 contributed by our @GrameneDatabase collaborators. Don't miss out! 🧬


The Functional Genomics Team at @emblebi is open to hosting #ARISE2 fellows! If you're interested in research infrastructure we welcome project ideas that support transcriptomics data reuse - incl. spatial, single-cell, or AI-ready infrastructure. embl.org/training/arise…

embl.org

ARISE2

Career Accelerator for Research Infrastructure Scientists

📢 Applications are now open for the #ARISE2 Fellowship Programme! With funding from @MSCActions, the programme trains scientists to become leaders in research infrastructures and innovate in the #LifeSciences. Apply here: embl.org/training/arise…

embl's tweet image. 📢 Applications are now open for the #ARISE2 Fellowship Programme!

With funding from @MSCActions, the programme trains scientists to become leaders in research infrastructures and innovate in the #LifeSciences.

Apply here: embl.org/training/arise…


We are seeking a Scientific Database Curator at @emblebi in collaboration with the @saezlab and @GSK. This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources Deadline 20 July

We have a curator position at @emblebi to work with GSK within a project to understand fibrotic processes (no PhD required). Deadline 20th July. Please share 🙏 embl.wd103.myworkdayjobs.com/en-US/EMBL/job…



Expression Atlas reposted

If EMBL-EBI data resources have saved you time & effort, now is your chance to give back! Fill in a 15-minute survey to help us: 🌍Demonstrate the real-world impact of these resources 🧠Understand your needs 🌟Secure continued funding Closes 16 July 👉 surveymonkey.com/r/QGFMBH8?chan…]


This week, our team will be attending the Spatial Transcriptomics & Proteomics event on March 5-6 at @AstraZeneca Discovery Centre !🧬 If you’re attending too, we’d love to connect, feel free to reach out to our team! #SpatialBiology #Proteomics #Networking @emblebi @EBItraining


Expression Atlas reposted

Thank you to everyone who attended the @ELIXIREurope #SpatialTranscriptomics FAIR Data Management Workshop over the last two days, both @emblebi and online! The discussions on metadata & data standards, archiving, and data retrieval were productive and insightful. #FAIRdata

ArrayExpressEBI's tweet image. Thank you to everyone who attended the @ELIXIREurope  #SpatialTranscriptomics FAIR Data Management Workshop over the last two days, both @emblebi and online! The discussions on metadata & data standards, archiving, and data retrieval were productive and insightful. #FAIRdata

Expression Atlas reposted

The bioinformatics arm of the Functional Genomics Team and @ExpressionAtlas will participate in the @nf_core #hackathon at the @wellcomegenome Campus Check out our challenge and join us, everyone is welcome! @emblebi @sangerinstitute #nextflow #singlecell

We've just put up the first batch of local sites for the upcoming @nf_core #hackathon (March 2025) on the website: nf-co.re/events/2025/ha… We've had a great response so far, with 23 sites (a record!), but we'd love more! Are you able to book a meeting room for a local site?

nf_core's tweet image. We've just put up the first batch of local sites for the upcoming @nf_core #hackathon (March 2025) on the website: nf-co.re/events/2025/ha…

We've had a great response so far, with 23 sites (a record!), but we'd love more!

Are you able to book a meeting room for a local site?


Excited to invite you to the Spatial Transcriptomics FAIR Data Management Workshop on Feb 26-27 at EMBL-EBI (hybrid)! Join us to discuss metadata & data standards, archiving, and data retrieval. Agenda & registration: tinyurl.com/spatial2025


We're excited to announce that we're now on @bluesky! Follow us at expressionatlas.bsky.social for updates and join the conversation. #BlueSky #NewBeginnings


Excited to announce that 15 new human proteomics datasets are now available in our latest bulk release, thanks to our collaboration with @pride_ebi! Learn more in our recent publication: pubs.acs.org/doi/10.1021/ac… 🧬 #Proteomics #Research


From the Functional Genomics team at @emblebi, we extend our warmest wishes for a joyous holiday season filled with cherished moments and success in the New Year. 🎄 #MerryChristmas2024 #MerryChristmas

ExpressionAtlas's tweet image. From the Functional Genomics team at @emblebi, we extend our warmest wishes for a joyous holiday season filled with cherished moments and success in the New Year. 🎄 #MerryChristmas2024 #MerryChristmas

Welcome @ChristinaErnst_ !

Welcome, Christina Ernst, our new Functional Genomics Team Leader! Find out about Christina’s plans to develop standards for new data types using AI. ebi.ac.uk/about/news/per…

emblebi's tweet image. Welcome, Christina Ernst, our new Functional Genomics Team Leader!

Find out about Christina’s plans to develop standards for new data types using AI.

ebi.ac.uk/about/news/per…


Expression Atlas reposted

Silvie & Liora from our team are attending the @SpatialBio meeting today, working towards establishing standards in spatial transcriptomics. Want to contribute? Share your thoughts through this short survey: forms.gle/HY4zNSN4HMr1E2… #SpatialTranscriptomics

ArrayExpressEBI's tweet image. Silvie & Liora from our team are attending the @SpatialBio meeting today, working towards establishing standards in spatial transcriptomics. Want to contribute? Share your thoughts through this short survey: forms.gle/HY4zNSN4HMr1E2… #SpatialTranscriptomics

Exciting news! The latest @ExpressionAtlas bulk release is out, featuring 4476 datasets across 66 species. Explore the newest EDTL dataset by @DIAMONDS_2020 and check out 15 new human proteomics datasets from our collaboration with @PRIDE_EBI at @EMBLEBI. Don't miss out! 🧬


Meet @irisdianauy, our bioinformatician! She actively contributes to the analysis workflows and production pipelines for transcriptomics for the @ExpressionAtlas. She is also Co-organiser and trainer in single-cell RNA-seq analysis trainings with @ebitraining

ExpressionAtlas's tweet image. Meet @irisdianauy, our bioinformatician! She actively contributes to the analysis workflows and production pipelines for transcriptomics for the @ExpressionAtlas. She is also Co-organiser and trainer in single-cell RNA-seq analysis trainings with @ebitraining

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