Galaxy single-cell & spatial omics community update: Navigating new frontiers in 2025. #SingelCellOmics #SpatialOmics #Genomics #Bioinformatics #Training #Galaxy @CellGenomics cell.com/cell-genomics/…

jsantoyo's tweet image. Galaxy single-cell & spatial omics community update: Navigating new frontiers in 2025. #SingelCellOmics #SpatialOmics #Genomics #Bioinformatics #Training #Galaxy @CellGenomics 
cell.com/cell-genomics/…

6/ We are excited to share this work with the community! Huge thanks to all collaborators and patients who made this possible. 💡 Check out the preprint for the full story: 👉 researchsquare.com/article/rs-769… #NSCLC #spatialomics @WesleyResearch @UQMedicine @pahospital @PARFoundation


🔬 Excited to share the publication "Integrating Spatial Omics and Deep Learning: Toward Predictive Models of Cardiomyocyte Differentiation Efficiency" 🔗brnw.ch/21wWNep #CardiacRegeneration #SpatialOmics #DeepLearning #GNN #RNN #PrecisionMedicine

Bioeng_MDPI's tweet image. 🔬 Excited to share the publication "Integrating Spatial Omics and Deep Learning: Toward Predictive Models of Cardiomyocyte Differentiation Efficiency"

 🔗brnw.ch/21wWNep

#CardiacRegeneration #SpatialOmics #DeepLearning #GNN #RNN #PrecisionMedicine

🚀 Calling all early-career researchers in single-cell genomics and spatial biology! Abstract submissions are OPEN for the 2026 Gordon Research Seminar (GRS): Spatial Omics × AI/ML 🗓 May 9–10, 2026 | Les Diablerets, Switzerland grc.org/single-cell-ge… #SpatialOmics #AI #ML

yuqitan3's tweet image. 🚀 Calling all early-career researchers in single-cell genomics and spatial biology!

Abstract submissions are OPEN for the 2026 Gordon Research Seminar (GRS): Spatial Omics × AI/ML
🗓 May 9–10, 2026 | Les Diablerets, Switzerland
grc.org/single-cell-ge…

#SpatialOmics #AI #ML

🔬 Excited to share the publication "Integrating Spatial Omics and Deep Learning: Toward Predictive Models of Cardiomyocyte Differentiation Efficiency" 🔗brnw.ch/21wWNep #CardiacRegeneration #SpatialOmics #DeepLearning #GNN #RNN #PrecisionMedicine

Bioeng_MDPI's tweet image. 🔬 Excited to share the publication "Integrating Spatial Omics and Deep Learning: Toward Predictive Models of Cardiomyocyte Differentiation Efficiency"

 🔗brnw.ch/21wWNep

#CardiacRegeneration #SpatialOmics #DeepLearning #GNN #RNN #PrecisionMedicine

🚀 Calling all early-career researchers in single-cell genomics and spatial biology! Abstract submissions are OPEN for the 2026 Gordon Research Seminar (GRS): Spatial Omics × AI/ML 🗓 May 9–10, 2026 | Les Diablerets, Switzerland grc.org/single-cell-ge… #SpatialOmics #AI #ML

yuqitan3's tweet image. 🚀 Calling all early-career researchers in single-cell genomics and spatial biology!

Abstract submissions are OPEN for the 2026 Gordon Research Seminar (GRS): Spatial Omics × AI/ML
🗓 May 9–10, 2026 | Les Diablerets, Switzerland
grc.org/single-cell-ge…

#SpatialOmics #AI #ML

Weekly reads 20/10/25: "From aging clones to generative genomics: evolution meets AI in modern biology" open.substack.com/pub/behindtheb… #AIinBiology #SingleCell #SpatialOmics #MultiOmics #DrugDiscovery #Genomics #DeepLearning


We’re excited to join Biomarkers and Precision Medicine US 2025 in San Francisco! See how our spatial biology solutions advance biomarker discovery and precision medicine. Visit us at Booth 40. More info: fcld.ly/78zph0b #SpatialBiology #SpatialOmics #MultiplexImaging

LeicaMicro's tweet image. We’re excited to join Biomarkers and Precision Medicine US 2025 in San Francisco! See how our spatial biology solutions advance biomarker discovery and precision medicine. Visit us at Booth 40.
More info:  fcld.ly/78zph0b 

#SpatialBiology #SpatialOmics #MultiplexImaging

Galaxy single-cell & spatial omics community update: Navigating new frontiers in 2025. #SingelCellOmics #SpatialOmics #Genomics #Bioinformatics #Training #Galaxy @CellGenomics cell.com/cell-genomics/…

jsantoyo's tweet image. Galaxy single-cell & spatial omics community update: Navigating new frontiers in 2025. #SingelCellOmics #SpatialOmics #Genomics #Bioinformatics #Training #Galaxy @CellGenomics 
cell.com/cell-genomics/…

6/ We are excited to share this work with the community! Huge thanks to all collaborators and patients who made this possible. 💡 Check out the preprint for the full story: 👉 researchsquare.com/article/rs-769… #NSCLC #spatialomics @WesleyResearch @UQMedicine @pahospital @PARFoundation


Couldn’t be prouder of my friend Nacho for publishing his first preprint! 🎉 Multi-omics integration and batch correction using a modality-agnostic deep learning framework biorxiv.org/content/10.110… #SingleCell #SpatialOmics #DeepLearning


#SpatialOmics MCMICRO Multiple Choice Microscopy pipeline mcmicro.org Multi-channel whole-slide images▶️ Single-cell data BaSiC▶️Illumination correction ASHLAR-▶️Tile stitch & alignment Coreograph▶️TMA core detection UnMICST Cypository Ilastik S3segmenter▶️…

HaoYin20's tweet image. #SpatialOmics

MCMICRO
Multiple Choice Microscopy pipeline
mcmicro.org

Multi-channel whole-slide images▶️
Single-cell data

BaSiC▶️Illumination correction
ASHLAR-▶️Tile stitch & alignment
Coreograph▶️TMA core detection
UnMICST Cypository Ilastik S3segmenter▶️…

scBSP: A fast and accurate tool for identifying spatially variable features from high-resolution spatial omics data. #SpatialOmics #Bioinformatics 🧬 🖥️ academic.oup.com/bioinformatics…

jsantoyo's tweet image. scBSP: A fast and accurate tool for identifying spatially variable features from high-resolution spatial omics data. #SpatialOmics #Bioinformatics 🧬 🖥️ 
academic.oup.com/bioinformatics…

Mind blowing development in single cell mass spec proteomics!!! Impressive talk by Matthias @labs_mann at @VIBConferences #SpatialOmics conference!

RongFan8's tweet image. Mind blowing development in single cell mass spec proteomics!!! Impressive talk by Matthias @labs_mann at @VIBConferences #SpatialOmics conference!
RongFan8's tweet image. Mind blowing development in single cell mass spec proteomics!!! Impressive talk by Matthias @labs_mann at @VIBConferences #SpatialOmics conference!

Galaxy single-cell & spatial omics community update: Navigating new frontiers in 2025. #SingelCellOmics #SpatialOmics #Genomics #Bioinformatics #Training #Galaxy @CellGenomics cell.com/cell-genomics/…

jsantoyo's tweet image. Galaxy single-cell & spatial omics community update: Navigating new frontiers in 2025. #SingelCellOmics #SpatialOmics #Genomics #Bioinformatics #Training #Galaxy @CellGenomics 
cell.com/cell-genomics/…

STAMP Single-Cell Transcriptomics Analysis & Multimodal Profiling through Sequencing-free, Imaging-based #SpatialOmics system CosMx Xenium Single-cell suspension cytospinned to slides 100 ~ >1M cells ⏫cell capture ⏬doublets Able to identify ultra-rare cell population…

HaoYin20's tweet image. STAMP
Single-Cell Transcriptomics Analysis & Multimodal Profiling through Sequencing-free, Imaging-based #SpatialOmics system
CosMx
Xenium

Single-cell suspension cytospinned to slides

100 ~ >1M cells
⏫cell capture
⏬doublets
Able to identify ultra-rare cell population…

#SpatialOmics The Spatial Atlas of Human Anatomy (SAHA): A Multimodal Subcellular-Resolution Reference Across Human Organs 15 M cells 100 donors 10 organs Liver Pancreas Bone marrow Lymph node PBMC Prostate Stomach ILeum Colon Appendix CosMX 1k 6k WTA Xenium GeoMx RNAscope…

HaoYin20's tweet image. #SpatialOmics

The Spatial Atlas of Human Anatomy (SAHA): A Multimodal Subcellular-Resolution Reference Across Human Organs

15 M cells
100 donors
10 organs

Liver
Pancreas
Bone marrow
Lymph node
PBMC
Prostate
Stomach
ILeum
Colon
Appendix

CosMX 1k 6k WTA
Xenium
GeoMx
RNAscope…

Happy to have contributed to this Voices piece on 'The impact of multi-omics in medicine' and sharing my views. " Thank you @CellRepMed editor Dr. Elisa Panada for this opportunity! #SpatialOmics @MDAndersonNews Read more here: cell.com/cell-reports-m…

IamLinghua's tweet image. Happy to have contributed to this Voices piece on 'The impact of multi-omics in medicine' and sharing my views. " 
Thank you @CellRepMed editor Dr. Elisa Panada for this opportunity! #SpatialOmics
@MDAndersonNews 
Read more here: cell.com/cell-reports-m…

A presentation on the new @curiobio SEEKER for #spatialomics. A tile of the size 3x3mm now, but 10x10mm coming.

AlbertVilella's tweet image. A presentation on the new @curiobio SEEKER for #spatialomics. A tile of the size 3x3mm now, but 10x10mm coming.

Up now: @LimbeckKat talking about the role of #topology in #SpatialOmics @Ytm2023. So cool! 😎

Pseudomanifold's tweet image. Up now: @LimbeckKat talking about the role of #topology in #SpatialOmics @Ytm2023.

So cool! 😎

🧐Interested in #SpatialOmics? ‼️‼️Registrations are now open for our 3-day course on Spatial Omics data analysis with R/Bioconductor in May: physalia-courses.org/courses-worksh… 🚀🚀Instructors: @steman_research & @LGMartelotto

Physacourses's tweet image. 🧐Interested in #SpatialOmics?

‼️‼️Registrations are now open for our 3-day course on Spatial Omics data analysis with R/Bioconductor in May: physalia-courses.org/courses-worksh…

🚀🚀Instructors: @steman_research & @LGMartelotto

The dawn of spatial omics | Science science.org/doi/10.1126/sc… #SpatialOmics

BioDecoded's tweet image. The dawn of spatial omics | Science
science.org/doi/10.1126/sc…

#SpatialOmics
BioDecoded's tweet image. The dawn of spatial omics | Science
science.org/doi/10.1126/sc…

#SpatialOmics
BioDecoded's tweet image. The dawn of spatial omics | Science
science.org/doi/10.1126/sc…

#SpatialOmics
BioDecoded's tweet image. The dawn of spatial omics | Science
science.org/doi/10.1126/sc…

#SpatialOmics

🚀 Calling all early-career researchers in single-cell genomics and spatial biology! Abstract submissions are OPEN for the 2026 Gordon Research Seminar (GRS): Spatial Omics × AI/ML 🗓 May 9–10, 2026 | Les Diablerets, Switzerland grc.org/single-cell-ge… #SpatialOmics #AI #ML

yuqitan3's tweet image. 🚀 Calling all early-career researchers in single-cell genomics and spatial biology!

Abstract submissions are OPEN for the 2026 Gordon Research Seminar (GRS): Spatial Omics × AI/ML
🗓 May 9–10, 2026 | Les Diablerets, Switzerland
grc.org/single-cell-ge…

#SpatialOmics #AI #ML

Mark your calendars for our exclusive webinar with Dr. Marco Vicari and Dr. Patrik Bjärterot, the masterminds behind groundbreaking work in spatial omics! Explore cutting-edge research in multimodal molecular analysis. Register: bit.ly/45XAKzo #SpatialOmics

us_hupo's tweet image. Mark your calendars for our exclusive webinar with Dr. Marco Vicari and Dr. Patrik Bjärterot, the masterminds behind groundbreaking work in spatial omics! Explore cutting-edge research in multimodal molecular analysis. Register: bit.ly/45XAKzo #SpatialOmics

#SpatialOmics #ChronicLimbThreateningIschemia #Diabetes Anterior Tibial Artery #Amputation scRNAseq n=4 #SpatialTranscriptomics Visium n=4 #SpatialMetabolomics #ImagingMassSpec n=7 RCTD integrates scRNA with Visium (wish a better interpretation of spatially-resolved arterial…

HaoYin20's tweet image. #SpatialOmics #ChronicLimbThreateningIschemia #Diabetes

Anterior Tibial Artery #Amputation
scRNAseq n=4
#SpatialTranscriptomics Visium n=4
#SpatialMetabolomics #ImagingMassSpec n=7

RCTD integrates scRNA with Visium (wish a better interpretation of spatially-resolved arterial…

Thrilled to see my friends @JulioSaezRod @DenisSchapiro at @UniHeidelberg. We chat for 3 hours and a lot of cool ideas! Go #spatialomics 😎😎

RongFan8's tweet image. Thrilled to see my friends @JulioSaezRod @DenisSchapiro at @UniHeidelberg. We chat for 3 hours and a lot of cool ideas! Go #spatialomics 😎😎
RongFan8's tweet image. Thrilled to see my friends @JulioSaezRod @DenisSchapiro at @UniHeidelberg. We chat for 3 hours and a lot of cool ideas! Go #spatialomics 😎😎
RongFan8's tweet image. Thrilled to see my friends @JulioSaezRod @DenisSchapiro at @UniHeidelberg. We chat for 3 hours and a lot of cool ideas! Go #spatialomics 😎😎
RongFan8's tweet image. Thrilled to see my friends @JulioSaezRod @DenisSchapiro at @UniHeidelberg. We chat for 3 hours and a lot of cool ideas! Go #spatialomics 😎😎

A huge thank you to @steman_research, @LGMartelotto, and everyone who joined us for the first edition of the #SpatialOmics course! 🎉 We hope you enjoyed the week and are now armed with valuable spatial-omics insights to propel your future research. 🌟🔬

Physacourses's tweet image. A huge thank you to @steman_research, @LGMartelotto, and everyone who joined us for the first edition of the #SpatialOmics course! 🎉 
We hope you enjoyed the week and are now armed with valuable spatial-omics insights to propel your future research. 🌟🔬

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