#spatialomics 搜尋結果
#SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…
#SpatialOmics MCMICRO Multiple Choice Microscopy pipeline mcmicro.org Multi-channel whole-slide images▶️ Single-cell data BaSiC▶️Illumination correction ASHLAR-▶️Tile stitch & alignment Coreograph▶️TMA core detection UnMICST Cypository Ilastik S3segmenter▶️…
scBSP: A fast and accurate tool for identifying spatially variable features from high-resolution spatial omics data. #SpatialOmics #Bioinformatics 🧬 🖥️ academic.oup.com/bioinformatics…
#SpatialOmics The Spatial Atlas of Human Anatomy (SAHA): A Multimodal Subcellular-Resolution Reference Across Human Organs 15 M cells 100 donors 10 organs Liver Pancreas Bone marrow Lymph node PBMC Prostate Stomach ILeum Colon Appendix CosMX 1k 6k WTA Xenium GeoMx RNAscope…
Excited to share that our latest article on #SpatialOmics in plant science is now published in @TrendsinBiotech — and featured on the cover! 🌱📘 This breakthrough approach maps molecules in plant tissues with precise spatial context, opening new doors for climate-smart,…
🌟 Thank You to Our Diamond Sponsor: Chan Zuckerberg Initiative! 🌟 We're thrilled to announce that the Chan Zuckerberg Initiative (CZI) is supporting scverse conference 2025 as a Diamond Sponsor! 💎 @ChanZuckerberg #ComputationalBiology #SingleCell #SpatialOmics #CELLxGENE
Join us & Massive Photonics on 23 Oct 2025 (4–5 PM CET) for a webinar with Prof. Ralf Jungmann, KOL on DNA-PAINT! Discover how single-molecule #SpatialOmics is reshaping #BioImaging. 🎁 Win a Smart DNA-PAINT Kit! Register: us06web.zoom.us/webinar/regist… #DNAPAINT #Microscopy #SMLM
Happy to have contributed to this Voices piece on 'The impact of multi-omics in medicine' and sharing my views. " Thank you @CellRepMed editor Dr. Elisa Panada for this opportunity! #SpatialOmics @MDAndersonNews Read more here: cell.com/cell-reports-m…
SpatialMETA is a conditional variational autoencoder-based framework designed for the integration of spatial transcriptomics and metabolomics data. @wanluliu #BiotechNatureComms #SpatialOmics #Metabolomics doi.org/10.1038/s41467…
STAMP Single-Cell Transcriptomics Analysis & Multimodal Profiling through Sequencing-free, Imaging-based #SpatialOmics system CosMx Xenium Single-cell suspension cytospinned to slides 100 ~ >1M cells ⏫cell capture ⏬doublets Able to identify ultra-rare cell population…
Join GESTALT @GESTALT_sp Let us learn #SpatialOmics together!😆 globalspatial.org @DrJasPlummer @ioavlachos @LGMartelotto @NatureGenet 2025 nature.com/articles/s4158…
🔬 CZI Workshop at scverse 2025 🔬 Multimodal And Spatial Single Cell Data: From Data APIs to AI-driven Biological Discovery 🧵 @ChanZuckerberg #scverse2025 #SingleCell #SpatialOmics #CELLxGENE #VirtualCells #AIBiology
Our team effort with @song_xiaofei and @UrogerliMD integrates imaging and transcriptomic from GeoMx, highlighting the sweet ‘spot’ at the sub-cellular level. Thrilled to have many people stopped by, including the @joebeechem @nanostringtech #spatialOmics #MoffittAACR24 @AACR
#SpatialOmics SpatioMark R::Statial Work with Xenium CODEX MIBI-TOF "SpatioMark first quantifies spatial proximity of one cell type to another using either a distance or cell abundance derived spatial proximity metric, denoises for segmentation artefacts, then fits a linear…
🙌Hey @utswcancer @UTSWCancerBio @UTSWHemeOnc @UTSWscience @UTSW_pathology, don't miss our next #KomenBreastCancerForum featuring Dr. Jasmine Plummer @DrJasPlummer @StJude *in person* Weds, May 17! hosted by @hmcarthur #TNBC #SpatialOmics
Student Success Alert! Innovation is driven by our hardworking, smart, and dedicated students. Happy to announce our students' awards in our lab! Congrats to: Mayar Allam Sandip Das Thaddeus M. Anirudh Sriram Neel Sarkar @CoulterBME @ahmetcoskun_lab #spatialomics
Very happy to kick off this course on #SpatialOmics and #MultiplexedImageAnalysis with @DenisSchapiro Victor Perez and @miguelib93
Mark your calendars for our exclusive webinar with Dr. Marco Vicari and Dr. Patrik Bjärterot, the masterminds behind groundbreaking work in spatial omics! Explore cutting-edge research in multimodal molecular analysis. Register: bit.ly/45XAKzo #SpatialOmics
A huge thank you to @steman_research, @LGMartelotto, and everyone who joined us for the first edition of the #SpatialOmics course! 🎉 We hope you enjoyed the week and are now armed with valuable spatial-omics insights to propel your future research. 🌟🔬
#SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…
Proud to share our collaborative review with colleagues across UQFI, IMB, QIMR, AIBN, Child Health Research Centre, and KIRAMS. We discuss how cell–cell interactions in TME can guide drug response & precision oncology. 🔗genomemedicine.biomedcentral.com/articles/10.11… #PrecisionOncology #SpatialOmics
Javier, scBSP seems like a promising tool in the rapidly expanding field of #SpatialOmics. Understanding the spatial variability of features could drastically enhance how we interpret high-resolution omics data. How does scBSP handle the noise inherent in spatial datasets? And…
#SpatialOmics MCMICRO Multiple Choice Microscopy pipeline mcmicro.org Multi-channel whole-slide images▶️ Single-cell data BaSiC▶️Illumination correction ASHLAR-▶️Tile stitch & alignment Coreograph▶️TMA core detection UnMICST Cypository Ilastik S3segmenter▶️…
scBSP: A fast and accurate tool for identifying spatially variable features from high-resolution spatial omics data. #SpatialOmics #Bioinformatics 🧬 🖥️ academic.oup.com/bioinformatics…
Join us & Massive Photonics on 23 Oct 2025 (4–5 PM CET) for a webinar with Prof. Ralf Jungmann, KOL on DNA-PAINT! Discover how single-molecule #SpatialOmics is reshaping #BioImaging. 🎁 Win a Smart DNA-PAINT Kit! Register: us06web.zoom.us/webinar/regist… #DNAPAINT #Microscopy #SMLM
SpatialMETA is a conditional variational autoencoder-based framework designed for the integration of spatial transcriptomics and metabolomics data. @wanluliu #BiotechNatureComms #SpatialOmics #Metabolomics doi.org/10.1038/s41467…
🌟 Thank You to Our Diamond Sponsor: Chan Zuckerberg Initiative! 🌟 We're thrilled to announce that the Chan Zuckerberg Initiative (CZI) is supporting scverse conference 2025 as a Diamond Sponsor! 💎 @ChanZuckerberg #ComputationalBiology #SingleCell #SpatialOmics #CELLxGENE
🔬 CZI Workshop at scverse 2025 🔬 Multimodal And Spatial Single Cell Data: From Data APIs to AI-driven Biological Discovery 🧵 @ChanZuckerberg #scverse2025 #SingleCell #SpatialOmics #CELLxGENE #VirtualCells #AIBiology
Excited to share our latest work "Multimodal Landscape of Atherosclerotic Plaques: A Spatial Omics Approach with Mass Spectrometry Imaging", just published in Analytica Chimica Acta Journal. #SpatialOmics #TranslationalResearch @FitzGerald__Lab sciencedirect.com/science/articl…
Single-cell spatial tech showdown! 🔬 CosMX, MERFISH, Xenium—each has strengths, but no one-size-fits-all. Factors like archival block age really influence results. Great comparison from @MDAndersonNews! #SpatialOmics #SingleCell
Join GESTALT @GESTALT_sp Let us learn #SpatialOmics together!😆 globalspatial.org @DrJasPlummer @ioavlachos @LGMartelotto @NatureGenet 2025 nature.com/articles/s4158…
🚀Save the Date! Join our exciting webinar series on the STOmics Stereo-CITE Proteo-Transcriptomics Solution. Discover how this spatial omics tech can supercharge your research. Oct 21 & 22, 4 PM GMT+8. Register: bit.ly/4nowKSb #STOmics #SpatialProfiling #SpatialOmics
🫀 New study in STTT: Stereo-seq + snRNA-seq mapped fulminant myocarditis, revealing mesothelial cells as early viral targets & IVIG improved survival—showing the power of spatiotemporal omics. 🚀✨ 🔗 doi.org/10.1038/s41392… #StereoSeq #SpatialOmics #CardioResearch
Weekly reads 15/09/22 🧬 DNA methylation as both cancer driver & evolutionary clock 🧫 SPACE brings CRISPR screens into 3D tissues 🤖 AI designs functional phages 🧠 SCLC plugs into brain circuits open.substack.com/pub/behindtheb… #Cancer #SingleCell #SpatialOmics #AI #Epigenetics
🔬 Perfect for #singlecell and #spatialomics analysis! The 🐍 #Python client plugs directly into @scverse_team. Use OmniPath with tools like decoupler.readthedocs.io and liana-py.readthedocs.io for pathway activity prediction, automated cell annotation, cell-cell communication ...
HAPPENING TOMORROW! You won't want to miss it 🧬 #Xenium #Visium #SpatialOmics #SpatialTranscriptomics
On 9/16 at 2PM, join #DukeMGC & @10xgenomics to explore how #VisiumHD and #Xenium platforms are advancing #spatialbiology! REGISTER HERE: docs.google.com/forms/d/17HIH2… Contact [email protected] or #DukeMGC Assistant Director, [email protected] with any questions.
#SpatialOmics MCMICRO Multiple Choice Microscopy pipeline mcmicro.org Multi-channel whole-slide images▶️ Single-cell data BaSiC▶️Illumination correction ASHLAR-▶️Tile stitch & alignment Coreograph▶️TMA core detection UnMICST Cypository Ilastik S3segmenter▶️…
#SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…
Excited to share that our latest article on #SpatialOmics in plant science is now published in @TrendsinBiotech — and featured on the cover! 🌱📘 This breakthrough approach maps molecules in plant tissues with precise spatial context, opening new doors for climate-smart,…
scBSP: A fast and accurate tool for identifying spatially variable features from high-resolution spatial omics data. #SpatialOmics #Bioinformatics 🧬 🖥️ academic.oup.com/bioinformatics…
I very much enjoyed working with editor @GaalBernadett and brilliant peers @fabian_theis @Danidiin @roserventotormo @mssanjavickovic @ltkagohara @afrendeiro @Johanna_A_Joyce on this Voices piece @CellSystemsCP check it out: doi.org/10.1016/j.cels… @MDAndersonNews #SpatialOmics
Happy to have contributed to this Voices piece on 'The impact of multi-omics in medicine' and sharing my views. " Thank you @CellRepMed editor Dr. Elisa Panada for this opportunity! #SpatialOmics @MDAndersonNews Read more here: cell.com/cell-reports-m…
SpatialData spatialdata.scverse.org/en/latest/ Establish a global common coordinate framework-> Multi-modal #SpatialOmics integration Align multislice for 3D #SpatialOmics napari-spatialdata Work with (RNA) Visium Xenium CosMx MEFISH (protein) CycIF MIBI-TOF #ImagingMassCytometry +HE…
STAMP Single-Cell Transcriptomics Analysis & Multimodal Profiling through Sequencing-free, Imaging-based #SpatialOmics system CosMx Xenium Single-cell suspension cytospinned to slides 100 ~ >1M cells ⏫cell capture ⏬doublets Able to identify ultra-rare cell population…
#SpatialOmics The Spatial Atlas of Human Anatomy (SAHA): A Multimodal Subcellular-Resolution Reference Across Human Organs 15 M cells 100 donors 10 organs Liver Pancreas Bone marrow Lymph node PBMC Prostate Stomach ILeum Colon Appendix CosMX 1k 6k WTA Xenium GeoMx RNAscope…
Mind blowing development in single cell mass spec proteomics!!! Impressive talk by Matthias @labs_mann at @VIBConferences #SpatialOmics conference!
BANKSY A #SpatialOMics R/Python analysis framework using Transcriptomic Neighborhood🤠(Not spatial coordinates Only) 1⃣Distance-weighted mean gene expression of each cell's neighborhood 2⃣Azimuthal Gabor filter▶️Gradient of gene expression in each cell's neighborhood Work with…
🙌Hey @utswcancer @UTSWCancerBio @UTSWHemeOnc @UTSWscience @UTSW_pathology, don't miss our next #KomenBreastCancerForum featuring Dr. Jasmine Plummer @DrJasPlummer @StJude *in person* Weds, May 17! hosted by @hmcarthur #TNBC #SpatialOmics
🌟 Thank You to Our Diamond Sponsor: Chan Zuckerberg Initiative! 🌟 We're thrilled to announce that the Chan Zuckerberg Initiative (CZI) is supporting scverse conference 2025 as a Diamond Sponsor! 💎 @ChanZuckerberg #ComputationalBiology #SingleCell #SpatialOmics #CELLxGENE
🧐Interested in #SpatialOmics? ‼️‼️Registrations are now open for our 3-day course on Spatial Omics data analysis with R/Bioconductor in May: physalia-courses.org/courses-worksh… 🚀🚀Instructors: @steman_research & @LGMartelotto
A presentation on the new @curiobio SEEKER for #spatialomics. A tile of the size 3x3mm now, but 10x10mm coming.
#SpatialOmics #ChronicLimbThreateningIschemia #Diabetes Anterior Tibial Artery #Amputation scRNAseq n=4 #SpatialTranscriptomics Visium n=4 #SpatialMetabolomics #ImagingMassSpec n=7 RCTD integrates scRNA with Visium (wish a better interpretation of spatially-resolved arterial…
Very happy to kick off this course on #SpatialOmics and #MultiplexedImageAnalysis with @DenisSchapiro Victor Perez and @miguelib93
Mark your calendars for our exclusive webinar with Dr. Marco Vicari and Dr. Patrik Bjärterot, the masterminds behind groundbreaking work in spatial omics! Explore cutting-edge research in multimodal molecular analysis. Register: bit.ly/45XAKzo #SpatialOmics
Thoroughly enjoyed our visit to @SciLifeLab to discuss & plan exciting #SpatialOmics work in #ProstateCancer w our friends @joalunatkthse, @mengxiao et al Rather bracing at -16°C ❄️🧊 but still managed a dip en route to hot tub&sauna! #SPACE_Study #Lethal_Clone #OrganscaleNodes
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