#spatialomics résultats de recherche
#SpatialOmics MCMICRO Multiple Choice Microscopy pipeline mcmicro.org Multi-channel whole-slide images▶️ Single-cell data BaSiC▶️Illumination correction ASHLAR-▶️Tile stitch & alignment Coreograph▶️TMA core detection UnMICST Cypository Ilastik S3segmenter▶️…
#SpatialOmics The Spatial Atlas of Human Anatomy (SAHA): A Multimodal Subcellular-Resolution Reference Across Human Organs 15 M cells 100 donors 10 organs Liver Pancreas Bone marrow Lymph node PBMC Prostate Stomach ILeum Colon Appendix CosMX 1k 6k WTA Xenium GeoMx RNAscope…
STAMP Single-Cell Transcriptomics Analysis & Multimodal Profiling through Sequencing-free, Imaging-based #SpatialOmics system CosMx Xenium Single-cell suspension cytospinned to slides 100 ~ >1M cells ⏫cell capture ⏬doublets Able to identify ultra-rare cell population…
scBSP: A fast and accurate tool for identifying spatially variable features from high-resolution spatial omics data. #SpatialOmics #Bioinformatics 🧬 🖥️ academic.oup.com/bioinformatics…
📢It’s now out in @NatureGenet! 🎉Congratulations to our amazing team @Yibo_Dai @GreenLymphoLab and wonderful collaborators @MDAndersonNews #SpatialOmics #TME #inflammatory niches 🌟Data & Code are publicly available nature.com/articles/s4158…
#SpatialOmics #ChronicLimbThreateningIschemia #Diabetes Anterior Tibial Artery #Amputation scRNAseq n=4 #SpatialTranscriptomics Visium n=4 #SpatialMetabolomics #ImagingMassSpec n=7 RCTD integrates scRNA with Visium (wish a better interpretation of spatially-resolved arterial…
🔬 Excited to share the publication "Integrating Spatial Omics and Deep Learning: Toward Predictive Models of Cardiomyocyte Differentiation Efficiency" 🔗brnw.ch/21wWNep #CardiacRegeneration #SpatialOmics #DeepLearning #GNN #RNN #PrecisionMedicine
🔬 CZI Workshop at scverse 2025 🔬 Multimodal And Spatial Single Cell Data: From Data APIs to AI-driven Biological Discovery 🧵 @ChanZuckerberg #scverse2025 #SingleCell #SpatialOmics #CELLxGENE #VirtualCells #AIBiology
Excited to share that our latest article on #SpatialOmics in plant science is now published in @TrendsinBiotech — and featured on the cover! 🌱📘 This breakthrough approach maps molecules in plant tissues with precise spatial context, opening new doors for climate-smart,…
#SpatialOmics #MyocardialInfarction #MolecularCartography 100-gene + #SeqIF 12-marker + #DeepVisualProteomics 4/24/49/96 h postMI🐭 Endocardial vWF mediates Mɸ infiltr Anti-vWF i.v. reduces Mɸ at endocardial, but not epicardial, core or border, zone, but causes infarct wall…
Happy to have contributed to this Voices piece on 'The impact of multi-omics in medicine' and sharing my views. " Thank you @CellRepMed editor Dr. Elisa Panada for this opportunity! #SpatialOmics @MDAndersonNews Read more here: cell.com/cell-reports-m…
Our team effort with @song_xiaofei and @UrogerliMD integrates imaging and transcriptomic from GeoMx, highlighting the sweet ‘spot’ at the sub-cellular level. Thrilled to have many people stopped by, including the @joebeechem @nanostringtech #spatialOmics #MoffittAACR24 @AACR
#SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…
Very happy to kick off this course on #SpatialOmics and #MultiplexedImageAnalysis with @DenisSchapiro Victor Perez and @miguelib93
A huge thank you to @steman_research, @LGMartelotto, and everyone who joined us for the first edition of the #SpatialOmics course! 🎉 We hope you enjoyed the week and are now armed with valuable spatial-omics insights to propel your future research. 🌟🔬
🙌Hey @utswcancer @UTSWCancerBio @UTSWHemeOnc @UTSWscience @UTSW_pathology, don't miss our next #KomenBreastCancerForum featuring Dr. Jasmine Plummer @DrJasPlummer @StJude *in person* Weds, May 17! hosted by @hmcarthur #TNBC #SpatialOmics
🚀We've just kicked off the #SpatialOmics in R/Bioconductor course with @steman_research and @LGMartelotto! 🌍Excited to see researchers from all over the globe joining us for this journey into cutting-edge spatial omics analysis Let's make this an incredible learning experience!
#SpatialOmics SpatioMark R::Statial Work with Xenium CODEX MIBI-TOF "SpatioMark first quantifies spatial proximity of one cell type to another using either a distance or cell abundance derived spatial proximity metric, denoises for segmentation artefacts, then fits a linear…
Student Success Alert! Innovation is driven by our hardworking, smart, and dedicated students. Happy to announce our students' awards in our lab! Congrats to: Mayar Allam Sandip Das Thaddeus M. Anirudh Sriram Neel Sarkar @CoulterBME @ahmetcoskun_lab #spatialomics
Get ready for #APDW2025! STOmics is coming to Singapore with exciting news. Learn about our enhanced Stereo-seq for FFPE & our Discovery Grant at Booth 52 (Nov 20-22). Let's discuss the future of #SpatialOmics!🔗 bit.ly/43DYdHy #FFPE #StereoSeq #GIResearch
Weekly reads 27/10/25: How cells and whales keep control open.substack.com/pub/behindtheb… #SpatialOmics #Immunotherapy #DeepLearning #Genomics #SystemsBiology
🔬 Excited to share the publication "Integrating Spatial Omics and Deep Learning: Toward Predictive Models of Cardiomyocyte Differentiation Efficiency" 🔗brnw.ch/21wWNep #CardiacRegeneration #SpatialOmics #DeepLearning #GNN #RNN #PrecisionMedicine
🚀 Calling all early-career researchers in single-cell genomics and spatial biology! Abstract submissions are OPEN for the 2026 Gordon Research Seminar (GRS): Spatial Omics × AI/ML 🗓 May 9–10, 2026 | Les Diablerets, Switzerland grc.org/single-cell-ge… #SpatialOmics #AI #ML
Weekly reads 20/10/25: "From aging clones to generative genomics: evolution meets AI in modern biology" open.substack.com/pub/behindtheb… #AIinBiology #SingleCell #SpatialOmics #MultiOmics #DrugDiscovery #Genomics #DeepLearning
We’re excited to join Biomarkers and Precision Medicine US 2025 in San Francisco! See how our spatial biology solutions advance biomarker discovery and precision medicine. Visit us at Booth 40. More info: fcld.ly/78zph0b #SpatialBiology #SpatialOmics #MultiplexImaging
Galaxy single-cell & spatial omics community update: Navigating new frontiers in 2025. #SingelCellOmics #SpatialOmics #Genomics #Bioinformatics #Training #Galaxy @CellGenomics cell.com/cell-genomics/…
Couldn’t be prouder of my friend Nacho for publishing his first preprint! 🎉 Multi-omics integration and batch correction using a modality-agnostic deep learning framework biorxiv.org/content/10.110… #SingleCell #SpatialOmics #DeepLearning
📢It’s now out in @NatureGenet! 🎉Congratulations to our amazing team @Yibo_Dai @GreenLymphoLab and wonderful collaborators @MDAndersonNews #SpatialOmics #TME #inflammatory niches 🌟Data & Code are publicly available nature.com/articles/s4158…
Last call! 🚨 The Stereo-CITE V1.1 webinar is tomorrow! Don’t miss this chance to elevate your research in spatial multi-omics. Join us for valuable insights on transcriptome and proteome analysis. Register: bit.ly/4nowKSb 🎥 Watch a sneak peek! #SpatialOmics #BioTech
Spatial Biology Market Set to Grow at 15% CAGR — Transforming Cancer Research & Precision Medicine Learn more 👉 meditechinsights.com/spatial-biolog… #SpatialBiology #SpatialOmics #Spatial #SpatialProteomics #SpatialGenomics #SingleCellAnalysis #Omics #Genomics #Proteomics #Oncology
🌿Why do leaves turn yellow? A spatiotemporal molecular map pieces together the answer: local onset, plant-wide signaling, and nutrient redistribution—enabling earlier alerts, tighter control, and higher yields. ✨🔗bit.ly/4nfDLUv #SpatialOmics #SingleCell
Thrilled to team up with @aruthak and @Adv_Biology to edit a special issue focused on #SpatialOmics in #Oncology. Please reach out if interested in contributing. Submission deadline: 1/12/2026.
#SpatialOmics #MyocardialInfarction #MolecularCartography 100-gene + #SeqIF 12-marker + #DeepVisualProteomics 4/24/49/96 h postMI🐭 Endocardial vWF mediates Mɸ infiltr Anti-vWF i.v. reduces Mɸ at endocardial, but not epicardial, core or border, zone, but causes infarct wall…
#SpatialOmics #ImagingMassSpec #SpatialTranscriptomics MISTy Multiview Intercellular SpaTial modeling framework bioconductor.org/packages/relea… View/spatial scale-specific feature interactions Intraview - same location (intra-to-multicellulat) Juxtaview - immediate neighborhood…
#SpatialOmics MCMICRO Multiple Choice Microscopy pipeline mcmicro.org Multi-channel whole-slide images▶️ Single-cell data BaSiC▶️Illumination correction ASHLAR-▶️Tile stitch & alignment Coreograph▶️TMA core detection UnMICST Cypository Ilastik S3segmenter▶️…
#SpatialOmics The Spatial Atlas of Human Anatomy (SAHA): A Multimodal Subcellular-Resolution Reference Across Human Organs 15 M cells 100 donors 10 organs Liver Pancreas Bone marrow Lymph node PBMC Prostate Stomach ILeum Colon Appendix CosMX 1k 6k WTA Xenium GeoMx RNAscope…
🙌Hey @utswcancer @UTSWCancerBio @UTSWHemeOnc @UTSWscience @UTSW_pathology, don't miss our next #KomenBreastCancerForum featuring Dr. Jasmine Plummer @DrJasPlummer @StJude *in person* Weds, May 17! hosted by @hmcarthur #TNBC #SpatialOmics
scBSP: A fast and accurate tool for identifying spatially variable features from high-resolution spatial omics data. #SpatialOmics #Bioinformatics 🧬 🖥️ academic.oup.com/bioinformatics…
#SpatialOmics #ChronicLimbThreateningIschemia #Diabetes Anterior Tibial Artery #Amputation scRNAseq n=4 #SpatialTranscriptomics Visium n=4 #SpatialMetabolomics #ImagingMassSpec n=7 RCTD integrates scRNA with Visium (wish a better interpretation of spatially-resolved arterial…
Mind blowing development in single cell mass spec proteomics!!! Impressive talk by Matthias @labs_mann at @VIBConferences #SpatialOmics conference!
Galaxy single-cell & spatial omics community update: Navigating new frontiers in 2025. #SingelCellOmics #SpatialOmics #Genomics #Bioinformatics #Training #Galaxy @CellGenomics cell.com/cell-genomics/…
I very much enjoyed working with editor @GaalBernadett and brilliant peers @fabian_theis @Danidiin @roserventotormo @mssanjavickovic @ltkagohara @afrendeiro @Johanna_A_Joyce on this Voices piece @CellSystemsCP check it out: doi.org/10.1016/j.cels… @MDAndersonNews #SpatialOmics
STAMP Single-Cell Transcriptomics Analysis & Multimodal Profiling through Sequencing-free, Imaging-based #SpatialOmics system CosMx Xenium Single-cell suspension cytospinned to slides 100 ~ >1M cells ⏫cell capture ⏬doublets Able to identify ultra-rare cell population…
Happy to have contributed to this Voices piece on 'The impact of multi-omics in medicine' and sharing my views. " Thank you @CellRepMed editor Dr. Elisa Panada for this opportunity! #SpatialOmics @MDAndersonNews Read more here: cell.com/cell-reports-m…
A presentation on the new @curiobio SEEKER for #spatialomics. A tile of the size 3x3mm now, but 10x10mm coming.
Very happy to kick off this course on #SpatialOmics and #MultiplexedImageAnalysis with @DenisSchapiro Victor Perez and @miguelib93
Thrilled to see my friends @JulioSaezRod @DenisSchapiro at @UniHeidelberg. We chat for 3 hours and a lot of cool ideas! Go #spatialomics 😎😎
Thoroughly enjoyed our visit to @SciLifeLab to discuss & plan exciting #SpatialOmics work in #ProstateCancer w our friends @joalunatkthse, @mengxiao et al Rather bracing at -16°C ❄️🧊 but still managed a dip en route to hot tub&sauna! #SPACE_Study #Lethal_Clone #OrganscaleNodes
Thrilled to team up with @aruthak and @Adv_Biology to edit a special issue focused on #SpatialOmics in #Oncology. Please reach out if interested in contributing. Submission deadline: 1/12/2026.
Student Success Alert! Innovation is driven by our hardworking, smart, and dedicated students. Happy to announce our students' awards in our lab! Congrats to: Mayar Allam Sandip Das Thaddeus M. Anirudh Sriram Neel Sarkar @CoulterBME @ahmetcoskun_lab #spatialomics
🧐Interested in #SpatialOmics? ‼️‼️Registrations are now open for our 3-day course on Spatial Omics data analysis with R/Bioconductor in May: physalia-courses.org/courses-worksh… 🚀🚀Instructors: @steman_research & @LGMartelotto
🔬 CZI Workshop at scverse 2025 🔬 Multimodal And Spatial Single Cell Data: From Data APIs to AI-driven Biological Discovery 🧵 @ChanZuckerberg #scverse2025 #SingleCell #SpatialOmics #CELLxGENE #VirtualCells #AIBiology
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