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#spatialtranscriptomics результаты поиска

jsantoyo's profile picture. Genomics & Bioinformatics Scientist at @EdinburghUni. Head of @edgenome | #Omics #NGS #LongReads | Views my own | Also @ https://t.co/TCJKasgyMt
Javier Santoyo
 @jsantoyo
17 окт.г.

CoCo-ST detects global and local biological structures in spatial transcriptomics datasets. #SpatialTranscriptomics #VarianceIdentification @NatureCellBio nature.com/articles/s4155…

jsantoyo's tweet image. CoCo-ST detects global and local biological structures in spatial transcriptomics datasets. #SpatialTranscriptomics #VarianceIdentification @NatureCellBio nature.com/articles/s4155…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
24 окт.г.

Systematic comparisons among 4 subcellular-resolution #SpatialTranscriptomics methods Stereo-seq v1.3 Visium HD FFPE CosMx 6k Xenium 5k Human Tumors Ground truth CODEX, +scRNAseq Gene detection sensitivity (CosMx performance...🙁) (Spatial) false positives Transcript-protein…

HaoYin20's tweet image. Systematic comparisons among 4 subcellular-resolution #SpatialTranscriptomics methods Stereo-seq v1.3 Visium HD FFPE CosMx 6k Xenium 5k Human Tumors Ground truth CODEX, +scRNAseq Gene detection sensitivity (CosMx performance...🙁) (Spatial) false positives Transcript-protein…
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jsantoyo's profile picture. Genomics & Bioinformatics Scientist at @EdinburghUni. Head of @edgenome | #Omics #NGS #LongReads | Views my own | Also @ https://t.co/TCJKasgyMt
Javier Santoyo
 @jsantoyo
24 сент.г.

Systematic benchmarking of computational methods to identify spatially variable genes. #SpatialTranscriptomics #MethodsBenchmarking @GenomeBiology genomebiology.biomedcentral.com/articles/10.11…

jsantoyo's tweet image. Systematic benchmarking of computational methods to identify spatially variable genes. #SpatialTranscriptomics #MethodsBenchmarking @GenomeBiology genomebiology.biomedcentral.com/articles/10.11…
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10xGenomics's profile picture. Enabling researchers to answer biology’s hardest and most elusive questions with innovative #singlecell, #spatialbiology & #insitu technology
10x Genomics
 @10xGenomics
2 сент.г.

Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz

10xGenomics's tweet image. Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz
10xGenomics's tweet image. Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz
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LambAlastair's profile picture. Prostate Cancer @CR_UK Clinician Scientist. Urologist. Robotics | #SPACE_Study PI | @TranslateTrial CI | @BJUIJournal SE pros/web | Views own. RT=endsmt
Alastair Lamb
 @LambAlastair
30 янв.г.

"We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025

LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
15 сент.г.

#SpatialTranscriptomics #BrainOrganoid #Glioblastoma Striatal implant of Brain organoids +Mutant TERT p.C228T TP53 R248Q➡️SOX11+ Proneural GBM subtype +Mutant TERT p.C228T PTENΔ NF1Δ➡️ERBB3+ Mesenchymal GBM subtype In-depth single-cell spatial transcriptional & CNV landscape…

HaoYin20's tweet image. #SpatialTranscriptomics #BrainOrganoid #Glioblastoma Striatal implant of Brain organoids +Mutant TERT p.C228T TP53 R248Q➡️SOX11+ Proneural GBM subtype +Mutant TERT p.C228T PTENΔ NF1Δ➡️ERBB3+ Mesenchymal GBM subtype In-depth single-cell spatial transcriptional & CNV landscape…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
1 сент.г.

#SpatialTranscriptomics Visium #CerebralMalaria 🐭+P.berghei ANKA -/+Artesunate Malaria infection▶️ ⏫🧠#EndothelialCell, immune cells SPATA spatial trajectory inference of EC-rich spots in infected🧠▶️ ⏫EC antigen processing/presentation + leukocyte adhesion ⏬BBB Partially…

HaoYin20's tweet image. #SpatialTranscriptomics Visium #CerebralMalaria 🐭+P.berghei ANKA -/+Artesunate Malaria infection▶️ ⏫🧠#EndothelialCell, immune cells SPATA spatial trajectory inference of EC-rich spots in infected🧠▶️ ⏫EC antigen processing/presentation + leukocyte adhesion ⏬BBB Partially…
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Valeriechew29's profile picture. Cancer immunologist, liver cancer, translational immunology @Singhealth. Assoc Prof @DukeNUS
Valerie Chew
 @Valeriechew29
8 нояб. 2023 г.

Good food and science. What more can I ask for? #cancerimmunology #spatialtranscriptomics

Valeriechew29's tweet image. Good food and science. What more can I ask for? #cancerimmunology #spatialtranscriptomics
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iMetaScience's profile picture. A Wiley partner journal aims to promote metagenomics and bioinformatics by publishing research articles, reproducible methods, protocols, and reviews.
iMeta
@iMetaScience
19 окт.г.

🧬 14 spatial clustering methods benchmarked across ~600 #SpatialTranscriptomics datasets 💻 Covering 10 technologies & 8 organs 📊 Reveals how data traits & spatial patterns shape accuracy ⚙️ Recommends optimal preprocessing & method selection 🔗 doi.org/10.1002/imt2.7……

iMetaScience's tweet image. 🧬 14 spatial clustering methods benchmarked across ~600 #SpatialTranscriptomics datasets 💻 Covering 10 technologies & 8 organs 📊 Reveals how data traits & spatial patterns shape accuracy ⚙️ Recommends optimal preprocessing & method selection 🔗 doi.org/10.1002/imt2.7……
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
4 окт.г.

#WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…

HaoYin20's tweet image. #WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
28 сент.г.

Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…

HaoYin20's tweet image. Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
19 июн.г.

CODA integrative CrOss-sample alignment and spatially Differential gene Analysis for #SpatialTranscriptomics Global rigid alignment➡️ Shared coordinate grid embedding➡️ 3-channel image representation➡️ LightGlue common domain identification➡️ Local nonlinear alignment Work with…

HaoYin20's tweet image. CODA integrative CrOss-sample alignment and spatially Differential gene Analysis for #SpatialTranscriptomics Global rigid alignment➡️ Shared coordinate grid embedding➡️ 3-channel image representation➡️ LightGlue common domain identification➡️ Local nonlinear alignment Work with…
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OhioStatePIIO's profile picture. Pelotonia Institute for Immuno-Oncology. A bench-to-bedside research initiative accelerating therapeutics that use the immune system to fight cancer. #PIIO
Pelotonia Institute for Immuno-Oncology
@OhioStatePIIO
19 сент.г.

🚨 Exciting Opportunity! 🚨 @OhioStatePIIO + @OSUWexMed Pathology are recruiting a Tenure-Track Faculty in Spatial Immuno-Oncology Research 🧬🔬 Lead cutting-edge work in #SpatialTranscriptomics, #SpatialProteomics & #ImmunoOncology to decode the #TumorMicroenvironment.…

OhioStatePIIO's tweet image. 🚨 Exciting Opportunity! 🚨 @OhioStatePIIO + @OSUWexMed Pathology are recruiting a Tenure-Track Faculty in Spatial Immuno-Oncology Research 🧬🔬 Lead cutting-edge work in #SpatialTranscriptomics, #SpatialProteomics & #ImmunoOncology to decode the #TumorMicroenvironment.…
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TheGregoryLab's profile picture. The Gregory lab @DukeU studies disease mechanism using scRNAseq & spatial molecular technologies. Focus on brain tumors, Alzheimer's and MS 🧠 Home to #DukeMGC
Gregory Lab
 @TheGregoryLab
20 окт.г.

November's #DukeSCIRIP seminar will feature: 1. Xiaohui Jiang of @DukeBiostats on 'X-bridge' for #SingleCell and spatial panel analysis 2. Dr. Ru-Rong Ji of @DukeMedSchool on #SpatialTranscriptomics of #SensoryNeurons 11/5 12-1pm in MSRBIII or online dmpi.duke.edu/duke-single-ce…

TheGregoryLab's tweet image. November's #DukeSCIRIP seminar will feature: 1. Xiaohui Jiang of @DukeBiostats on 'X-bridge' for #SingleCell and spatial panel analysis 2. Dr. Ru-Rong Ji of @DukeMedSchool on #SpatialTranscriptomics of #SensoryNeurons 11/5 12-1pm in MSRBIII or online dmpi.duke.edu/duke-single-ce…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
15 сент.г.

#SpatialTranscriptomics 🐭#Stroke #Visium @10xGenomics #Photothrombosis 3 dpi Stroke▶️ ⏫Microglia/Macrophage Galectin-1/3/9➡️ Astrocyte/Oligodendrocyte CD44 at peri-infarct zone▶️ ⏫remyelination ⏫neurobehavioral performance Post-stroke benefits of LGALS9-expressing…

HaoYin20's tweet image. #SpatialTranscriptomics 🐭#Stroke #Visium @10xGenomics #Photothrombosis 3 dpi Stroke▶️ ⏫Microglia/Macrophage Galectin-1/3/9➡️ Astrocyte/Oligodendrocyte CD44 at peri-infarct zone▶️ ⏫remyelination ⏫neurobehavioral performance Post-stroke benefits of LGALS9-expressing…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
12 июл.г.

Myocilin marks the glia limitans superficialis Astrocyte Re-analysis of brain-wide #SpatialTranscriptomics & sc-/sn-RNAseq data➡️ Myoc+ 2% of total astrocytes that cover brain/spinal cord surface and extend processes into parenchyma Any marker for glia limitans perivascularis…

HaoYin20's tweet image. Myocilin marks the glia limitans superficialis Astrocyte Re-analysis of brain-wide #SpatialTranscriptomics & sc-/sn-RNAseq data➡️ Myoc+ 2% of total astrocytes that cover brain/spinal cord surface and extend processes into parenchyma Any marker for glia limitans perivascularis…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
6 июл.г.

STORIES SpatioTemporal Omics eneRgIES Learning Waddington epigenetic (+regulon) landscape from multi-time-point Stereo-seq #SpatialTranscriptomics Potential-based Fused Gromov-Wasserstein #OptimalTransport Linear▶️gene expression error Quadratic▶️spatial consistency @gjhuizing…

HaoYin20's tweet image. STORIES SpatioTemporal Omics eneRgIES Learning Waddington epigenetic (+regulon) landscape from multi-time-point Stereo-seq #SpatialTranscriptomics Potential-based Fused Gromov-Wasserstein #OptimalTransport Linear▶️gene expression error Quadratic▶️spatial consistency @gjhuizing…
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NancyZh60672287's profile picture. Genomics, Computational Biology, Professor of Statistics and Data Science at UPenn
Nancy Zhang
 @NancyZh60672287
17 янв. 2024 г.

How do we uncover cell-cell interactions from #SpatialTranscriptomics data? Excited to share Niche-DE (doi.org/10.1186/s13059…). Niche-DE asks how does a cell’s transcriptome depend on its spatial neighbors, by identifying Niche-Differentially Expressed genes. 1/9

NancyZh60672287's tweet image. How do we uncover cell-cell interactions from #SpatialTranscriptomics data? Excited to share Niche-DE (doi.org/10.1186/s13059…). Niche-DE asks how does a cell’s transcriptome depend on its spatial neighbors, by identifying Niche-Differentially Expressed genes. 1/9
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
24 окт.г.

Systematic comparisons among 4 subcellular-resolution #SpatialTranscriptomics methods Stereo-seq v1.3 Visium HD FFPE CosMx 6k Xenium 5k Human Tumors Ground truth CODEX, +scRNAseq Gene detection sensitivity (CosMx performance...🙁) (Spatial) false positives Transcript-protein…

HaoYin20's tweet image. Systematic comparisons among 4 subcellular-resolution #SpatialTranscriptomics methods Stereo-seq v1.3 Visium HD FFPE CosMx 6k Xenium 5k Human Tumors Ground truth CODEX, +scRNAseq Gene detection sensitivity (CosMx performance...🙁) (Spatial) false positives Transcript-protein…
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LingyuLi61's profile picture. Post-doctoral Fellow @HKUniversity, PhD @ShandongU. Focus on bioinformatics computational methods development.
Lingyu Li
 @LingyuLi61
23 окт.г.

I'm excited to present my first postdoctoral research project: FineST⭐[GitHub:github.com/StatBiomed/Fin…]. Welcome to join and discuss! Your valuable feedback would be greatly appreciated. 🤝 #SpatialTranscriptomics #TumorMicroenvironment #Bioinformatics #CellCommunication

LingyuLi61's tweet image. I'm excited to present my first postdoctoral research project: FineST⭐[GitHub:github.com/StatBiomed/Fin…]. Welcome to join and discuss! Your valuable feedback would be greatly appreciated. 🤝 #SpatialTranscriptomics #TumorMicroenvironment #Bioinformatics #CellCommunication
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SigniosBio's profile picture. AI-powered multiomics & bioinformatics. An affiliate of MedGenome. Global RWE to support discovery in oncology, rare disease & more. https://t.co/dIzpUsKevd
SigniosBio
 @SigniosBio
22 окт.г.

Visium HD or Xenium Prime 5K? Two paths to spatial insights—one for broad, unbiased discovery, the other for targeted, cell-level precision. Read how each fits discovery and validation workflows: signiosbio.com/blog/10x-visiu… #SpatialBiology #SingleCell #SpatialTranscriptomics

SigniosBio's tweet card. Compare 10x Genomics Visium HD and Xenium Prime 5K for spatial transcriptomics. Explore chemistry, resolution, FFPE compatibility, and application fit for discovery vs targeted research. Advanced...
10x Visium HD vs. Xenium Prime | Advanced Deep Dive
Источник: signiosbio.com
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ST_Omics's profile picture. Stereo-seq technology offers unprecedented field-of-view & nanoscale resolution, providing researchers with a novel tool to explore spatial biology.
STOmics
 @ST_Omics
22 окт.г.

Excited to share the fresh STOmics Newsletter (Aug–Sep 2025)! 🎉 220+ Stereo-seq breakthroughs, Alzheimer’s atlas, event recaps & how-to videos—all in one click. Read & retweet! 👉bit.ly/4o0AdXt #STOmics #StereoSeq #SpatialTranscriptomics

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EnriqueI_VelVi's profile picture. Enrique I. Velazquez Villarreal, MD, PhD, MPH, MS. Precision Medicine, Cancer Research, Computational Genomics and Artificial Intelligence.
EVelazquezVillarreal
 @EnriqueI_VelVi
21 окт.г.

🦠💩 #Microbiome 🧬🔬 #SpatialTranscriptomics 🤖🗣️🤖 #ArtificialIntelligence Agents for #PrecisionMedicine & #ColorectalCancer Research 💉 Proud of our #VelazquezVillarrealLab team for presenting TWO outstanding posters on 🎉 2025 @cityofhope Annual Poster Session @PECGSnetwork

EnriqueI_VelVi's tweet image. 🦠💩 #Microbiome 🧬🔬 #SpatialTranscriptomics 🤖🗣️🤖 #ArtificialIntelligence Agents for #PrecisionMedicine & #ColorectalCancer Research 💉 Proud of our #VelazquezVillarrealLab team for presenting TWO outstanding posters on 🎉 2025 @cityofhope Annual Poster Session @PECGSnetwork
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TheGregoryLab's profile picture. The Gregory lab @DukeU studies disease mechanism using scRNAseq & spatial molecular technologies. Focus on brain tumors, Alzheimer's and MS 🧠 Home to #DukeMGC
Gregory Lab
 @TheGregoryLab
20 окт.г.

November's #DukeSCIRIP seminar will feature: 1. Xiaohui Jiang of @DukeBiostats on 'X-bridge' for #SingleCell and spatial panel analysis 2. Dr. Ru-Rong Ji of @DukeMedSchool on #SpatialTranscriptomics of #SensoryNeurons 11/5 12-1pm in MSRBIII or online dmpi.duke.edu/duke-single-ce…

TheGregoryLab's tweet image. November's #DukeSCIRIP seminar will feature: 1. Xiaohui Jiang of @DukeBiostats on 'X-bridge' for #SingleCell and spatial panel analysis 2. Dr. Ru-Rong Ji of @DukeMedSchool on #SpatialTranscriptomics of #SensoryNeurons 11/5 12-1pm in MSRBIII or online dmpi.duke.edu/duke-single-ce…
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iMetaScience's profile picture. A Wiley partner journal aims to promote metagenomics and bioinformatics by publishing research articles, reproducible methods, protocols, and reviews.
iMeta
@iMetaScience
19 окт.г.

🧬 14 spatial clustering methods benchmarked across ~600 #SpatialTranscriptomics datasets 💻 Covering 10 technologies & 8 organs 📊 Reveals how data traits & spatial patterns shape accuracy ⚙️ Recommends optimal preprocessing & method selection 🔗 doi.org/10.1002/imt2.7……

iMetaScience's tweet image. 🧬 14 spatial clustering methods benchmarked across ~600 #SpatialTranscriptomics datasets 💻 Covering 10 technologies & 8 organs 📊 Reveals how data traits & spatial patterns shape accuracy ⚙️ Recommends optimal preprocessing & method selection 🔗 doi.org/10.1002/imt2.7……
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jsantoyo's profile picture. Genomics & Bioinformatics Scientist at @EdinburghUni. Head of @edgenome | #Omics #NGS #LongReads | Views my own | Also @ https://t.co/TCJKasgyMt
Javier Santoyo
 @jsantoyo
17 окт.г.

CoCo-ST detects global and local biological structures in spatial transcriptomics datasets. #SpatialTranscriptomics #VarianceIdentification @NatureCellBio nature.com/articles/s4155…

jsantoyo's tweet image. CoCo-ST detects global and local biological structures in spatial transcriptomics datasets. #SpatialTranscriptomics #VarianceIdentification @NatureCellBio nature.com/articles/s4155…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
24 окт.г.

Systematic comparisons among 4 subcellular-resolution #SpatialTranscriptomics methods Stereo-seq v1.3 Visium HD FFPE CosMx 6k Xenium 5k Human Tumors Ground truth CODEX, +scRNAseq Gene detection sensitivity (CosMx performance...🙁) (Spatial) false positives Transcript-protein…

HaoYin20's tweet image. Systematic comparisons among 4 subcellular-resolution #SpatialTranscriptomics methods Stereo-seq v1.3 Visium HD FFPE CosMx 6k Xenium 5k Human Tumors Ground truth CODEX, +scRNAseq Gene detection sensitivity (CosMx performance...🙁) (Spatial) false positives Transcript-protein…
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LambAlastair's profile picture. Prostate Cancer @CR_UK Clinician Scientist. Urologist. Robotics | #SPACE_Study PI | @TranslateTrial CI | @BJUIJournal SE pros/web | Views own. RT=endsmt
Alastair Lamb
 @LambAlastair
30 янв.г.

"We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025

LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
LambAlastair's tweet image. "We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025
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simocristea's profile picture. cancer genomics AI scientist; head of Data Science & AI and group leader @DanaFarber_Hale; research scientist @Harvard; phd @eth.🇷🇴🇸🇪🇨🇭🇺🇸
Simona Cristea
@simocristea
23 февр. 2023 г.

🚨New #SpatialTranscriptomics #Bioinformatics data resource out in @naturemethods. SODB, a platform with >2,400 manually curated spatial experiments from >25 spatial omics technologies & interactive analytical modules. This🧵will walk you through all the features of SODB [1/33]

simocristea's tweet image. 🚨New #SpatialTranscriptomics #Bioinformatics data resource out in @naturemethods. SODB, a platform with >2,400 manually curated spatial experiments from >25 spatial omics technologies & interactive analytical modules. This🧵will walk you through all the features of SODB [1/33]
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10xGenomics's profile picture. Enabling researchers to answer biology’s hardest and most elusive questions with innovative #singlecell, #spatialbiology & #insitu technology
10x Genomics
 @10xGenomics
2 сент.г.

Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz

10xGenomics's tweet image. Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz
10xGenomics's tweet image. Accurate cell segmentation is integral to #spatialtranscriptomics—that's why we never stop improving ours. Large cells? Tissues with dense nuclei? We’ve got you covered. See how you can segment cells more accurately than ever before: bit.ly/4m1nEcz
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BrantBassamPhD's profile picture. Spatial biology specialist—technophile—publisher—artist—atheist —Elon —David Deutsch—Thomas Sowell. Show me the data. Opinions are mine.
Brant Bassam
@BrantBassamPhD
21 нояб. 2023 г.

We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…

BrantBassamPhD's tweet image. We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…
BrantBassamPhD's tweet image. We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…
BrantBassamPhD's tweet image. We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…
BrantBassamPhD's tweet image. We’re all wondering what the future of #spatialtranscriptomics (ST) has in store. Well, I think the near future will look a lot like the new 6000-plex dataset reviewed here (link to the original source at the end of this post). SAMPLE An entire 100 mm² intact 5 µm FFPE section…
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ScienceStowers's profile picture. Celebrating 25 years of discovery. #Stowers25
Stowers Institute
 @ScienceStowers
15 июн. 2023 г.

Ruochen Dong, @linheng_li lab, gave an outstanding presentation on using #SpatialTranscriptomics to interrogate HSC-niche interaction in the mouse fetal liver at #ISSCR2023. He also received merit and travel awards. Congratulations! @ISSCR

ScienceStowers's tweet image. Ruochen Dong, @linheng_li lab, gave an outstanding presentation on using #SpatialTranscriptomics to interrogate HSC-niche interaction in the mouse fetal liver at #ISSCR2023. He also received merit and travel awards. Congratulations! @ISSCR
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NancyZh60672287's profile picture. Genomics, Computational Biology, Professor of Statistics and Data Science at UPenn
Nancy Zhang
 @NancyZh60672287
17 янв. 2024 г.

How do we uncover cell-cell interactions from #SpatialTranscriptomics data? Excited to share Niche-DE (doi.org/10.1186/s13059…). Niche-DE asks how does a cell’s transcriptome depend on its spatial neighbors, by identifying Niche-Differentially Expressed genes. 1/9

NancyZh60672287's tweet image. How do we uncover cell-cell interactions from #SpatialTranscriptomics data? Excited to share Niche-DE (doi.org/10.1186/s13059…). Niche-DE asks how does a cell’s transcriptome depend on its spatial neighbors, by identifying Niche-Differentially Expressed genes. 1/9
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iMetaScience's profile picture. A Wiley partner journal aims to promote metagenomics and bioinformatics by publishing research articles, reproducible methods, protocols, and reviews.
iMeta
@iMetaScience
19 окт.г.

🧬 14 spatial clustering methods benchmarked across ~600 #SpatialTranscriptomics datasets 💻 Covering 10 technologies & 8 organs 📊 Reveals how data traits & spatial patterns shape accuracy ⚙️ Recommends optimal preprocessing & method selection 🔗 doi.org/10.1002/imt2.7……

iMetaScience's tweet image. 🧬 14 spatial clustering methods benchmarked across ~600 #SpatialTranscriptomics datasets 💻 Covering 10 technologies & 8 organs 📊 Reveals how data traits & spatial patterns shape accuracy ⚙️ Recommends optimal preprocessing & method selection 🔗 doi.org/10.1002/imt2.7……
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manoliskellis's profile picture. Dissecting disease mechanism. Single-cell, Epigenomics, Regulatory Genomics, Disease Genetics, Brain, Cancer, Metabolism. @MIT Prof, @MIT_CSAIL, @BroadInstitute
Manolis Kellis
@manoliskellis
20 апр. 2023 г.

Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…

manoliskellis's tweet image. Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…
manoliskellis's tweet image. Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…
manoliskellis's tweet image. Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…
manoliskellis's tweet image. Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
28 сент.г.

Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…

HaoYin20's tweet image. Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
15 сент.г.

#SpatialTranscriptomics 🐭#Stroke #Visium @10xGenomics #Photothrombosis 3 dpi Stroke▶️ ⏫Microglia/Macrophage Galectin-1/3/9➡️ Astrocyte/Oligodendrocyte CD44 at peri-infarct zone▶️ ⏫remyelination ⏫neurobehavioral performance Post-stroke benefits of LGALS9-expressing…

HaoYin20's tweet image. #SpatialTranscriptomics 🐭#Stroke #Visium @10xGenomics #Photothrombosis 3 dpi Stroke▶️ ⏫Microglia/Macrophage Galectin-1/3/9➡️ Astrocyte/Oligodendrocyte CD44 at peri-infarct zone▶️ ⏫remyelination ⏫neurobehavioral performance Post-stroke benefits of LGALS9-expressing…
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DiannaHNguyen1's profile picture. Resident Physician @UTHPMR | #Physiatry | @AOCPMR National Resident Council | @utarlington @TCOM_UNTHSC @SBS_UNTHSC Alum
Dianna H. Nguyen, DO, PhD
 @DiannaHNguyen1
27 мар. 2024 г.

GOD IS GOOD! Today, I passed my #PhD Dissertation Defense!!! 🎉 Thank you to everyone who believed in me. Thank you to all my mentors, friends, and family. 🥰 I would not be where I am today without all of you. 🙏❤️ @SBS_UNTHSC #SpatialTranscriptomics #DoubleDocs @A_P_S_A

DiannaHNguyen1's tweet image. GOD IS GOOD! Today, I passed my #PhD Dissertation Defense!!! 🎉 Thank you to everyone who believed in me. Thank you to all my mentors, friends, and family. 🥰 I would not be where I am today without all of you. 🙏❤️ @SBS_UNTHSC #SpatialTranscriptomics #DoubleDocs @A_P_S_A
DiannaHNguyen1's tweet image. GOD IS GOOD! Today, I passed my #PhD Dissertation Defense!!! 🎉 Thank you to everyone who believed in me. Thank you to all my mentors, friends, and family. 🥰 I would not be where I am today without all of you. 🙏❤️ @SBS_UNTHSC #SpatialTranscriptomics #DoubleDocs @A_P_S_A
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LukasValihrach's profile picture. Group Leader | GliaOmics Lab & GeneCore Facility | 🧬Single-Cell & Spatial Transcriptomics | 🧠 Glial Cells in Health & Disease | @IBT_CAS 🇪🇺 | ❤️ My Twins
Lukas Valihrach
 @LukasValihrach
27 июл. 2023 г.

Wow, this is big! Congrats to all authors!👏 👉 Spatial and single-nucleus transcriptomic analysis of genetic and sporadic forms of Alzheimer's Disease 👉 biorxiv.org/content/10.110… #SpatialTranscriptomics #Visium #snRNAseq #ParseBiosciences

LukasValihrach's tweet image. Wow, this is big! Congrats to all authors!👏 👉 Spatial and single-nucleus transcriptomic analysis of genetic and sporadic forms of Alzheimer's Disease 👉 biorxiv.org/content/10.110… #SpatialTranscriptomics #Visium #snRNAseq #ParseBiosciences
swaruplab1's profile picture. Neurogenomics Research Lab
swaruplab
 @swaruplab1
26 июл. 2023 г.

Our work on spatial multiomics in Alzheimer’s disease and Down syndrome now on bioRxiv biorxiv.org/content/10.110…

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LambAlastair's profile picture. Prostate Cancer @CR_UK Clinician Scientist. Urologist. Robotics | #SPACE_Study PI | @TranslateTrial CI | @BJUIJournal SE pros/web | Views own. RT=endsmt
Alastair Lamb
 @LambAlastair
23 мар.г.

Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet

LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
LambAlastair's tweet image. Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet
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ScienceinBoston's profile picture. Your complete source for life science news and events in the Greater Boston Area. Brought to you by the Science in the City program at @STEMCELLTech.
Science in Boston
@ScienceinBoston
15 апр.г.

🔬 A new computational approach pioneered by researchers at the @broadinstitute eliminates time-intensive imaging, enabling high-resolution spatial mapping of gene expression in tissue. See how they're making #SpatialTranscriptomics easier for everyone: bit.ly/3G9Hrau

ScienceinBoston's tweet image. 🔬 A new computational approach pioneered by researchers at the @broadinstitute eliminates time-intensive imaging, enabling high-resolution spatial mapping of gene expression in tissue. See how they're making #SpatialTranscriptomics easier for everyone: bit.ly/3G9Hrau
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HaoYin20's profile picture. Cardiovascular biologist @WesternU PhD @UCalgary BSc @PKU1898 Views are my own Developmental Biology Social media editor @Dev_Bio_Journal Just call me Hao (How)
Hao Yin
@HaoYin20
2 июл.г.

#SpatialTranscriptomics #ParkinsonsDisease A role of #FGF9 in Glia #Ferroptosis in PD?😁 #Visium @10xGenomics +snRNAseq MPTP🐭 #SubstantiaNigra FGF9 ⏬in PD Neuron ⏫in PD Ependymal cell FGF9-to-FGFR1/2/3 (CellChat, likely Neuron-to-Oligodendrocyte/Astrocyte) ⏬in PD…

HaoYin20's tweet image. #SpatialTranscriptomics #ParkinsonsDisease A role of #FGF9 in Glia #Ferroptosis in PD?😁 #Visium @10xGenomics +snRNAseq MPTP🐭 #SubstantiaNigra FGF9 ⏬in PD Neuron ⏫in PD Ependymal cell FGF9-to-FGFR1/2/3 (CellChat, likely Neuron-to-Oligodendrocyte/Astrocyte) ⏬in PD…
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