#spatialtranscriptomics search results

#SpatialTranscriptomics Visium @10xGenomics Human Left Atrial Appendage (n=2 donors) & Pulmonary Vein (n=8 donors) Spatial location of #AtrialFibrillation risk genes PITX2 SHOX2 HCN4 @CVpathol 2025 sciencedirect.com/science/articl…

🧬 IICD Monthly Research Roundup – November 2025 #IICDResearch #CancerGenomics #SpatialTranscriptomics #CancerResearch

New publication by our student, Odmaa Bayaraa: 'Multi-region #SpatialTranscriptomics reveals region specific differences in response to amyloid beta (Aβ) plaque induced changes in #Alzheimers disease (#AD)' So proud of this work & Odmaa! Check it out 🧬🧠 pubmed.ncbi.nlm.nih.gov/41318546/

Accurately deciphering the spatial gene expression characteristics of individual cells represents a core demand in spatial transcriptomics research. #SpatialTranscriptomics #CellSegmentationTech #SpatialOmics #SingleCellSpatialExpression

Unlocking the true power of precision therapeutics: Spatial RNA medicine maps gene expression within tissues to target treatments exactly where they're needed. 🧬🔬 Curious how this changes drug design? Read more: news-medical.net/life-sciences/… #PrecisionMedicine #SpatialTranscriptomics

#SpatialTranscriptomics Visium @10xGenomics Tuberous sclerosis complex-associated Renal Angiomyolipoma (n=1) vs sporadic AML (n=1) vs Renal Cell Carcinoma (n=1) Melanocytic traits in AML MITF MLANA PMEL @RyutaWatanab999 @SciReports 2025 nature.com/articles/s4159…

This review presents spatial transcriptomics as a key tool in cancer research, preserving tissue-level RNA localization to reveal tumor heterogeneity and microenvironment interactions. doi.org/10.1007/s44272… #SpatialTranscriptomics

To truly understand biology, researchers need to connect data to meaning. Spatial molecular imaging combines transcriptomic insights with spatial context. Explore more about the value of high-resolution spatial molecular imaging👉 bit.ly/4ay8A3M #SpatialTranscriptomics

Comparative analysis of commercial Imaging-based #SpatialTranscriptomics methods Xenium CosMx 1k MERSCOPE Tissue Microarray 17 tumors + 16 normal tissues Transcript count Corr. with reference bulk TCGA GTEx RNAseq or scRNAseq Segmentation (Precision Recall F1 score) Accuracy:…

🧬 See Every Gene in Place Without Sequencing! 🔍 New tech enables whole-genome spatial transcriptomics at single-molecule resolution without sequencing. #SpatialTranscriptomics #SingleMolecule #Genomics #ImagingTech #OmicsInnovation #PrecisionBiolo cell.com/cell/fulltext/…

Registrations are now open for our brand-new course on Spatial Transcriptomics, taught by Tancredi Pentimalli from the Max Delbrück Center in Berlin. 👉 Check it out: physalia-courses.org/courses-worksh… #SpatialTranscriptomics

Roots are the anchor of life! 🔍🌱STOmics Stereo-seq, in @MolecularPlant, maps HMGB1 to root sclerenchyma cells—unlocking genetic secrets for drought resistance & next-gen precision breeding.🔗 doi.org/10.1016/j.molp… #SpatialTranscriptomics #Rice #PlantSci #AgriTech

Delighted this #microRNA 140 paper is now published in Osteoarthritis and Cartilage doi.org/10.1016/j.joca… Thank you to all involved, and to the journal and reviewers #spatialTranscriptomics

I’ll be speaking at The Festival of Genomics & Biodata 2026! I'll be sharing our work on rare #placental diseases using #spatialtranscriptomics #pregnancy #miscarrage 📅 28–29 January 2026 Register here: hubs.la/Q03JMvwd0 #FOG2026 @scastesparraka @UCLchildhealth

After years spent mapping the cellular landscape of the Alzheimer’s temporal cortex using #singlenuc & #spatialtranscriptomics @CARTANAbio ,our paper is out in @NatureComms nature.com/articles/s4146… rdcu.be/eRxNG Shoutout to @Roche #Alzheimers #Neuroscience #Spatial

@simcluster turns your messy single-cell data into crisp, spatially-aware neighborhoods—no GPS required for your cells. Plot, cluster, repeat. Ready to map biology at 10 µm resolution? #SingleCell #SpatialTranscriptomics #Bioinformatics

Congrats to the winners of the MERFISH 2.0™ World Immunotherapy Council (APAC) Grant Programme, presented w/ @GenomaxTech & LifeStrands Genomics! These researchers are pushing the boundaries of #spatialtranscriptomics in immunotherapy. We're excited to follow their progress!

Seurat is fast, Giotto is deep. For spatial transcriptomics, why the hell should we have to choose? 🤔 I got tired of the trade-off, so I spent months building a solution to get the best of both worlds. #bioinformatics #spatialtranscriptomics #rstats #datascience

#SpatialTranscriptomics Visium @10xGenomics Human Left Atrial Appendage (n=2 donors) & Pulmonary Vein (n=8 donors) Spatial location of #AtrialFibrillation risk genes PITX2 SHOX2 HCN4 @CVpathol 2025 sciencedirect.com/science/articl…

Systematic comparisons among 4 subcellular-resolution #SpatialTranscriptomics methods Stereo-seq v1.3 Visium HD FFPE CosMx 6k Xenium 5k Human Tumors Ground truth CODEX, +scRNAseq Gene detection sensitivity (CosMx performance...🙁) (Spatial) false positives Transcript-protein…

🚨New #SpatialTranscriptomics #Bioinformatics data resource out in @naturemethods. SODB, a platform with >2,400 manually curated spatial experiments from >25 spatial omics technologies & interactive analytical modules. This🧵will walk you through all the features of SODB [1/33]

Ruochen Dong, @linheng_li lab, gave an outstanding presentation on using #SpatialTranscriptomics to interrogate HSC-niche interaction in the mouse fetal liver at #ISSCR2023. He also received merit and travel awards. Congratulations! @ISSCR

New kid in town #spatialtranscriptomics @10xGenomics

CoCo-ST detects global and local biological structures in spatial transcriptomics datasets. #SpatialTranscriptomics #VarianceIdentification @NatureCellBio nature.com/articles/s4155…

Excited to share our #SingleCell and #SpatialTranscriptomics analysis of #ExerciseTraining remodeling of #WhiteAdiposeTissue through innervation, vascularization, and #ExtracellularMatrix in mouse and human with #LaurieGoodyear #JanWillemMiddelbeek @PasqualeNigro9 @MVamvini…

We are very very VERY excited to be running #cosmx #singlecell #spatialtranscriptomics experiments in @UofGlasgow @UofGCancerSci @UofGMVLS Well done to the @LabSpatialNBJ team @nanostringtech

Excellent talk from @Sandy_Figiel in @Uroweb #EAUlab session at #EAU25 presenting our cool data (I'm bias!) on #SpatialTranscriptomics & #ClonalAnalysis to detect unique features of metastasing clones in #ProstateCancer. @OxPCaBiol #SPACE_Study #3DLightsheet

Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339 93 common genes lung adenocarcinoma pleural mesothelioma Corr. Bulk RNAseq, GeoMx "better F1-scores with Xenium-MM (median, > 75%) than…

Vispro improves imaging analysis for Visium spatial transcriptomics.#SpatialTranscriptomics #Visium #ImageProcessing #Bioinformatics #Genomics @GenomeBiology genomebiology.biomedcentral.com/articles/10.11…

#SpatialTranscriptomics #ParkinsonsDisease A role of #FGF9 in Glia #Ferroptosis in PD?😁 #Visium @10xGenomics +snRNAseq MPTP🐭 #SubstantiaNigra FGF9 ⏬in PD Neuron ⏫in PD Ependymal cell FGF9-to-FGFR1/2/3 (CellChat, likely Neuron-to-Oligodendrocyte/Astrocyte) ⏬in PD…

🔬 A new computational approach pioneered by researchers at the @broadinstitute eliminates time-intensive imaging, enabling high-resolution spatial mapping of gene expression in tissue. See how they're making #SpatialTranscriptomics easier for everyone: bit.ly/3G9Hrau

1st single-cell #SpatialTranscriptomics map of human coronary #Atherosclerosis published in peer-reviewed format🤠 CosMx 1k + GeoMx @brukerspatial Immune cell-focused analysis Use CosMx data to deconvolve GeoMx cell composition...😆 @EmboMolMed 2025 embopress.org/doi/full/10.10…

"We all love the pretty pictures we get from #SpatialTranscriptomics but the real value lies in the ability to precisely determine the cellular composition & cell-cell relationships - not possible with bulk RNA or even scRNA approaches" 💯% well said @bayraktar_lab! 👏 #FoG2025

Comparative analysis of commercial Imaging-based #SpatialTranscriptomics methods Xenium CosMx 1k MERSCOPE Tissue Microarray 17 tumors + 16 normal tissues Transcript count Corr. with reference bulk TCGA GTEx RNAseq or scRNAseq Segmentation (Precision Recall F1 score) Accuracy:…

STORIES SpatioTemporal Omics eneRgIES Learning Waddington epigenetic (+regulon) landscape from multi-time-point Stereo-seq #SpatialTranscriptomics Potential-based Fused Gromov-Wasserstein #OptimalTransport Linear▶️gene expression error Quadratic▶️spatial consistency @gjhuizing…

Pleased to share our latest #SpatialTranscriptomics output now on @biorxivpreprint We show marked variation in gene expr relating to @Decipher_VCYT, #Oncotype_DX & #ProstaDiag genomic scores Being presented by @Sandy_Figiel this afternoon #EAU23!! biorxiv.org/content/10.110…

#WernerSyndrome hiPSC-derived engineered vessel #SpatialTranscriptomics #Visium @10xGenomics + #Metabolomics▶️ #BranchedChainKetoAcid⬇️ #MonohydroxyFattyAcid⬆️ in Werner vessels with traits of #PrematureAging Aligned #SmoothMuscleCell in Collagen hydrogel➡️ Roll-up around φ…

Congrats to @Sandy_Figiel for winning poster 1st Prize (out of 53 posters!) at #OxSymp23 @OxfordCancer. Using #SpatialTranscriptomics to reveal problem of heterogeneity when using genomic prognostic scores in #ProstateCancer #Organscale Full preprint: biorxiv.org/content/10.110…